BHLH95 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT1G49770 T030599_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a member of the basic helix loop helix family of transcription factors. Loss of RGE1 function causes shriveled seeds that contain small embryos. The cuticle in the embryos does not develop normally, possible due to the adeherence of the endosperm to the developing embryo. RGE1 is expressed in the endosperm surrounding region which directly surrounds the developing embryo, however it exerts its effect non autonomously- in the developing embryo. Mutant seedlings are extremely sensitive to dessication due to the abnormal cuticle.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G49770.1 bHLH 72 120

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.2481s0020 Capsella grandiflora Cagra.2481s0020 N 0.914
Bostr.26675s0191 Boechera stricta Bostr.26675s0191 N 0.914
PRUPE_ppa018148mg Prunus persica PRUPE_ppa018148mg N 0.914
Carubv10011964m.g Capsella rubella Carubv10011964m.g N 0.914
RGE1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003696 N 0.914
Thhalv10012185m.g Eutrema salsugineum Thhalv10012185m.g N 0.914
Bra040671 Brassica rapa Bra040671 N 0.914
Bo6g018390 Brassica oleracea Bo6g018390 N 0.914
Bo5g076460 Brassica oleracea Bo5g076460 N 0.914
Bra018796 Brassica rapa Bra018796 N 0.914
Pm005302 Prunus mume Pm005302 N 0.902
Pavir.J18412 Panicum virgatum Pavir.J18412 N 0.894
gene24577-v1.0-hybrid Fragaria vesca gene24577-v1.0-hybrid N 0.894
30170.m013700 Ricinus communis 30170.m013700 N 0.883
MDP0000484847 Malus domestica MDP0000484847 N 0.883
AMTR_s00017p00226990 Amborella trichopoda AMTR_s00017p00226990 N 0.870
29801.m003163 Ricinus communis 29801.m003163 N 0.870
SapurV1A.0005s1150 Salix purpurea SapurV1A.0005s1150 N 0.870
Gorai.002G135000 Gossypium raimondii Gorai.002G135000 N 0.870
Pm021290 Prunus mume Pm021290 N 0.870
PRUPE_ppa022683mg Prunus persica PRUPE_ppa022683mg N 0.870
GSMUA_Achr9G08780_001 Musa acuminata GSMUA_Achr9G08780_001 N 0.870
TCM_033803 Theobroma cacao TCM_033803 N 0.870
TCM_007083 Theobroma cacao TCM_007083 N 0.870
RGE1 Vitis vinifera VIT_03s0063g00170 N 0.870
VIT_18s0001g10300 Vitis vinifera VIT_18s0001g10300 N 0.870
GLYMA02G11500 Glycine max GLYMA02G11500 N 0.864
Eucgr.G01493 Eucalyptus grandis Eucgr.G01493 N 0.864
Gorai.013G045100 Gossypium raimondii Gorai.013G045100 N 0.864
RGE1 Populus trichocarpa POPTR_0001s31250 N 0.859
cassava47360.m1 Manihot esculenta cassava47360.m1 N 0.859
cassava46929.m1 Manihot esculenta cassava46929.m1 N 0.859
SapurV1A.0643s0100 Salix purpurea SapurV1A.0643s0100 N 0.859
SapurV1A.0423s0120 Salix purpurea SapurV1A.0423s0120 N 0.852
MDP0000713910 Malus domestica MDP0000713910 N 0.852
SELMODRAFT_446556 Selaginella moellendorffii SELMODRAFT_446556 N 0.852
SELMODRAFT_424152 Selaginella moellendorffii SELMODRAFT_424152 N 0.852
Si009419m.g Setaria italica Si009419m.g N 0.851
Ca_06466 Cicer arietinum Ca_06466 N 0.849
mgf020647m Mimulus guttatus mgf020647m N 0.845
Ciclev10030106m.g Citrus clementina Ciclev10030106m.g N 0.843
POPTR_0014s02600 Populus trichocarpa POPTR_0014s02600 N 0.843
orange1.1g037241m.g Citrus sinensis orange1.1g037241m.g N 0.843
MTR_4g085700 Medicago truncatula MTR_4g085700 N 0.842
Ciclev10003973m.g Citrus clementina Ciclev10003973m.g N 0.840
orange1.1g038084m.g Citrus sinensis orange1.1g038084m.g N 0.840