BHLH10 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT2G31220 T030626_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BHLH10
M06731_2.00
Arabidopsis thaliana
YCACCGACANHDNH

DNHDNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
bHLH10_col_a
(Direct) (Direct)
BHLH10
M06732_2.00
Arabidopsis thaliana
NDBCACCGACANH

DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
bHLH10_colamp_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G31220.1 bHLH 244 293
AT2G31220.2 bHLH 244 293

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Carubv10023056m.g Capsella rubella Carubv10023056m.g I 0.914
Cagra.6952s0001 Capsella grandiflora Cagra.6952s0001 I 0.914
Bostr.24513s0102 Boechera stricta Bostr.24513s0102 I 0.914
fgenesh2_kg.4__1109__AT2G31220.1 Arabidopsis lyrata fgenesh2_kg.4__1109__AT2G31220.1 I 0.902