CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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AT2G43140
(
Arabidopsis thaliana
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
AT2G43140
T030635_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN
NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.866
0.796
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.845
0.735
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.845
0.735
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT2G43140.1
bHLH
143
191
HPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQ
AT2G43140.2
bHLH
240
288
HPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQ
Links
Other
bHLH
family TFs
Other
Arabidopsis thaliana
TFs
185 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy