AT5G51780 (Arabidopsis thaliana)

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT5G51780 T030708_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a putative transcription factor that regulates iron uptake responses. mRNA is detected in the outer cell layers of the root and accumulates in response to iron deficiency. The expression of many iron-regulated genes is dependent on FIT1. It specifically regulates FRO2 at the level of mRNA accumulation and IRT1 at the level of protein accumulation.Similar to FER in tomato and is a regulator of iron uptake. It is post-transcriptionally controlled.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Arabidopsis thaliana Transfac license required
Transfac license required
Matys et al.(2006)
0.893 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G51780.1 bHLH 2 54
AT5G51780.2 bHLH 25 77


Other bHLH family TFs
Other Arabidopsis thaliana TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Bo7g110280 Brassica oleracea Bo7g110280 I 0.914
Thhalv10026341m.g Eutrema salsugineum Thhalv10026341m.g I 0.914
fgenesh2_kg.8__1059__AT5G51780.1 Arabidopsis lyrata fgenesh2_kg.8__1059__AT5G51780.1 I 0.914
Bra019167 Brassica rapa Bra019167 I 0.902
Thhalv10009922m.g Eutrema salsugineum Thhalv10009922m.g I 0.901
Bostr.15774s0324 Boechera stricta Bostr.15774s0324 I 0.894
cassava43207.valid.m1 Manihot esculenta cassava43207.valid.m1 I 0.894
POPTR_0012s14080 Populus trichocarpa POPTR_0012s14080 I 0.894
Cagra.0277s0021 Capsella grandiflora Cagra.0277s0021 I 0.894
Carubv10027166m.g Capsella rubella Carubv10027166m.g I 0.894
Bostr.7867s0349 Boechera stricta Bostr.7867s0349 I 0.893
AT4G25400 Arabidopsis thaliana AT4G25400 D 0.893
Bra022562 Brassica rapa Bra022562 I 0.890
Solyc06g035490.2 Solanum lycopersicum Solyc06g035490.2 I 0.883
LjSGA_023375.1 Lotus japonicus LjSGA_023375.1 I 0.882
Pm019419 Prunus mume Pm019419 I 0.882
MDP0000246258 Malus domestica MDP0000246258 I 0.882
cassava45968.m1 Manihot esculenta cassava45968.m1 I 0.881
Bo2g048240 Brassica oleracea Bo2g048240 I 0.879
Bostr.13671s0206 Boechera stricta Bostr.13671s0206 I 0.871
PK11667.1 Cannabis sativa PK11667.1 I 0.871
GLYMA16G32610 Glycine max GLYMA16G32610 I 0.871
GLYMA09G27610 Glycine max GLYMA09G27610 I 0.871
PK15358.1 Cannabis sativa PK15358.1 I 0.871
Ca_22233 Cicer arietinum Ca_22233 I 0.871
Ciclev10006628m.g Citrus clementina Ciclev10006628m.g I 0.870
orange1.1g036406m.g Citrus sinensis orange1.1g036406m.g I 0.870
cassava21379.m1 Manihot esculenta cassava21379.m1 I 0.870
Thhalv10015297m.g Eutrema salsugineum Thhalv10015297m.g I 0.867
TCM_016133 Theobroma cacao TCM_016133 I 0.866
TCM_016134 Theobroma cacao TCM_016134 I 0.866
Gorai.006G196500 Gossypium raimondii Gorai.006G196500 I 0.860
GLYMA09G27630 Glycine max GLYMA09G27630 N 0.859
MTR_0007s0380 Medicago truncatula MTR_0007s0380 N 0.859
Ciclev10006639m.g Citrus clementina Ciclev10006639m.g N 0.858
30147.m014147 Ricinus communis 30147.m014147 N 0.858
MTR_1g102370 Medicago truncatula MTR_1g102370 N 0.858
Cucsa.302590 Cucumis sativus Cucsa.302590 N 0.855
Cagra.0568s0165 Capsella grandiflora Cagra.0568s0165 N 0.851
Carubv10011792m.g Capsella rubella Carubv10011792m.g N 0.851
Aquca_013_00494 Aquilegia coerulea Aquca_013_00494 N 0.851
fgenesh2_kg.2__186__AT1G62975.1 Arabidopsis lyrata fgenesh2_kg.2__186__AT1G62975.1 I 0.850
Cagra.1670s0006 Capsella grandiflora Cagra.1670s0006 I 0.850
Bostr.22157s0026 Boechera stricta Bostr.22157s0026 I 0.850
BHLH125 Arabidopsis thaliana AT1G62975 I 0.850
Carubv10020804m.g Capsella rubella Carubv10020804m.g I 0.850
Bo9g103560 Brassica oleracea Bo9g103560 N 0.849
GLYMA16G32620 Glycine max GLYMA16G32620 N 0.848
Carubv10006264m.g Capsella rubella Carubv10006264m.g I 0.845
Cagra.2248s0016 Capsella grandiflora Cagra.2248s0016 I 0.845
Lus10027394.g Linum usitatissimum Lus10027394.g N 0.842
MTR_0007s0330 Medicago truncatula MTR_0007s0330 N 0.841