AT5G56960 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT5G56960 T030712_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.858 0.796
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G56960.1 bHLH 287 335
AT5G56960.2 bHLH 346 394

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.914
Bra035639 Brassica rapa Bra035639 I 0.914
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.914
Bo2g032920 Brassica oleracea Bo2g032920 I 0.903
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.893
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.893
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.893
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.893
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.882
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.873
Pm027191 Prunus mume Pm027191 I 0.869
Cla017100 Citrullus lanatus Cla017100 I 0.869
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.869
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.869
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.869
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.869
MDP0000782908 Malus domestica MDP0000782908 I 0.869
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.869
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.869
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.869
MDP0000252899 Malus domestica MDP0000252899 I 0.868
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.868
29912.m005337 Ricinus communis 29912.m005337 I 0.868
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.868
MDP0000119495 Malus domestica MDP0000119495 I 0.868
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.865
TCM_037645 Theobroma cacao TCM_037645 I 0.863
PK15505.1 Cannabis sativa PK15505.1 D 0.858
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.858
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.854
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.854
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.854
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.854
Si024546m.g Setaria italica Si024546m.g I 0.849
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.849
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.849
mgf018190m Mimulus guttatus mgf018190m I 0.845
GSMUA_Achr7G09080_001 Musa acuminata GSMUA_Achr7G09080_001 N 0.839