BHLH72 (Arabidopsis thaliana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 AT5G61270 T030715_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Basic helix-loop-helix (bHLH) phytochrome interacting factor. Interacts specifically with the far-red light#Aeiabsorbing Pfr form of phyB through a conserved domain called the active phyB binding motif. Upon light exposure, PIF7 rapidly migrates to intranuclear speckles, where it colocalizes with phyB. Role as negative regulator of phyB-mediated seedling deetiolation.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
BHLH72
M06743_2.00
Arabidopsis thaliana
VCACGTGGSHHHHNS

SNDDDDSCCACGTGB
Dap-seq
OMalley et al.(2016)
PIF7_col_a
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G61270.1 bHLH 168 216
AT5G61270.2 bHLH 80 128
AT5G61270.3 bHLH 80 128

Links

Other bHLH family TFs
Other Arabidopsis thaliana TFs

8 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cagra.0542s0021 Capsella grandiflora Cagra.0542s0021 I 0.914
Carubv10027660m.g Capsella rubella Carubv10027660m.g I 0.914
Thhalv10004458m.g Eutrema salsugineum Thhalv10004458m.g I 0.914
Bostr.26833s0112 Boechera stricta Bostr.26833s0112 I 0.914
PIF7 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002119 I 0.914
Bra012972 Brassica rapa Bra012972 I 0.914
Bo7g098470 Brassica oleracea Bo7g098470 I 0.890