Bo4g008180 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo4g008180 T031152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.914 0.918
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN

NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.890 0.918
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK

MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.890 0.918
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.890 0.898
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.890 0.898
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN

NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.890 0.898
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.882 0.653
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV

BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.879 0.918
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.843 0.531
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV

BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.840 0.633
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g008180.1 bHLH 332 380

Links

Other bHLH family TFs
Other Brassica oleracea TFs

672 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I 0.000
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I 0.000
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I 0.000
SNZ Arabidopsis thaliana AT2G39250 I 0.000
SMZ Arabidopsis thaliana AT3G54990 D 0.000
TOE2 Arabidopsis thaliana AT5G60120 D 0.000
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I 0.000
Bostr.26833s0222 Boechera stricta Bostr.26833s0222 I 0.000
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I 0.000
Bo8g087280 Brassica oleracea Bo8g087280 I 0.000
Bo6g068410 Brassica oleracea Bo6g068410 I 0.000
Bo9g141100 Brassica oleracea Bo9g141100 I 0.000
Bra020262 Brassica rapa Bra020262 I 0.000
Bra007123 Brassica rapa Bra007123 I 0.000
Bra002510 Brassica rapa Bra002510 I 0.000
PK16652.1 Cannabis sativa PK16652.1 I 0.000
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I 0.000
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I 0.000
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I 0.000
Carubv10018526m.g Capsella rubella Carubv10018526m.g I 0.000
Carubv10023614m.g Capsella rubella Carubv10023614m.g I 0.000
Carubv10026292m.g Capsella rubella Carubv10026292m.g I 0.000
Ca_26761 Cicer arietinum Ca_26761 I 0.000
Cla020387 Citrullus lanatus Cla020387 I 0.000
Cucsa.165940 Cucumis sativus Cucsa.165940 I 0.000
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I 0.000
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I 0.000
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I 0.000
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I 0.000
GLYMA10G22390 Glycine max GLYMA10G22390 I 0.000
GLYMA02G09600 Glycine max GLYMA02G09600 I 0.000
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I 0.000
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I 0.000
Lus10040365.g Linum usitatissimum Lus10040365.g I 0.000
MDP0000285955 Malus domestica MDP0000285955 I 0.000
MDP0000281079 Malus domestica MDP0000281079 I 0.000
MDP0000130802 Malus domestica MDP0000130802 I 0.000
MTR_1g049140 Medicago truncatula MTR_1g049140 I 0.000
Pm018608 Prunus mume Pm018608 I 0.000
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I 0.000
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I 0.000
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.000
Sb10g001490 Sorghum bicolor Sb10g001490 I 0.000
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.000