CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo4g126940
(
Brassica oleracea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bo4g126940
T031169_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH104
M01706_2.00
Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC
PBM
Weirauch et al.(2014)
pTH7365
0.891
0.940
BHLH104
M06737_2.00
Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC
Dap-seq
OMalley et al.(2016)
bHLH104_col_b
0.891
0.940
BHLH34
M01704_2.00
Arabidopsis thaliana
VCACGYGH
DCRCGTGB
PBM
Weirauch et al.(2014)
pTH7212
0.856
0.940
BHLH34
M06734_2.00
Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN
Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a
0.856
0.940
BHLH34
M06735_2.00
Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY
Dap-seq
OMalley et al.(2016)
bHLH34_col
0.856
0.940
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo4g126940.1
bHLH
135
184
GTKACRERLRREKLNDKFMDLSSVLEPGRTPKTDKPAILDDAIRVLNQLR
Links
Other
bHLH
family TFs
Other
Brassica oleracea
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy