Bo6g108270 (Brassica oleracea)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bo6g108270 T031229_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07858.1
M01123_2.00
Cannabis sativa
HCACGTGB

VCACGTGD
PBM
Lambert et al.(2019)
pTH11370
0.884 0.960
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.853 0.500
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.853 0.500
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g108270.1 bHLH 162 211

Links

Other bHLH family TFs
Other Brassica oleracea TFs

263 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_10096 Aegilops tauschii F775_10096 I 0.894
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I 0.883
AMTR_s00101p00150740 Amborella trichopoda AMTR_s00101p00150740 I 0.839
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I 0.853
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I 0.894
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I 0.840
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.842
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.884
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.849
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N 0.858
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I 0.853
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I 0.853
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I 0.894
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I 0.853
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I 0.914
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I 0.853
BHLH82 Arabidopsis thaliana AT5G58010 I 0.853
LRL2 Arabidopsis thaliana AT4G30980 D 0.853
BHLH32 Arabidopsis thaliana AT3G25710 I 0.894
BHLH66 Arabidopsis thaliana AT2G24260 I 0.853
BHLH30 Arabidopsis thaliana AT1G68810 I 0.914
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I 0.894
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I 0.853
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I 0.853
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I 0.914
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I 0.853
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N 0.858
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N 0.842
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I 0.853
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.894
Bo2g138630 Brassica oleracea Bo2g138630 I 0.894
Bo1g011740 Brassica oleracea Bo1g011740 I 0.853
Bo9g133640 Brassica oleracea Bo9g133640 I 0.853
Bo8g099910 Brassica oleracea Bo8g099910 I 0.853
Bo7g081980 Brassica oleracea Bo7g081980 I 0.894
Bo2g028920 Brassica oleracea Bo2g028920 I 0.853
Bo4g154370 Brassica oleracea Bo4g154370 I 0.853
Bo3g018990 Brassica oleracea Bo3g018990 I 0.853
Bo6g095860 Brassica oleracea Bo6g095860 I 0.890
Bra002679 Brassica rapa Bra002679 I 0.853
Bra004015 Brassica rapa Bra004015 I 0.914
Bra004338 Brassica rapa Bra004338 I 0.914
Bra006788 Brassica rapa Bra006788 I 0.853
Bra007863 Brassica rapa Bra007863 I 0.853
Bra011237 Brassica rapa Bra011237 I 0.853
Bra020398 Brassica rapa Bra020398 I 0.853
Bra025158 Brassica rapa Bra025158 I 0.894
Bra026510 Brassica rapa Bra026510 I 0.894
Bra032111 Brassica rapa Bra032111 I 0.853
PK14040.1 Cannabis sativa PK14040.1 I 0.853
PK07858.1 Cannabis sativa PK07858.1 D 0.884
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I 0.853
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I 0.894
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I 0.914
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I 0.853
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I 0.853
Carubv10023532m.g Capsella rubella Carubv10023532m.g I 0.853
Carubv10017470m.g Capsella rubella Carubv10017470m.g I 0.894
Carubv10005248m.g Capsella rubella Carubv10005248m.g I 0.853
Carubv10028492m.g Capsella rubella Carubv10028492m.g I 0.853
Carubv10020515m.g Capsella rubella Carubv10020515m.g I 0.914
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.884
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I 0.853
evm.TU.supercontig_1892.1 Carica papaya evm.TU.supercontig_1892.1 I 0.850
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N 0.842
Ca_03340 Cicer arietinum Ca_03340 I 0.853
Ca_08440 Cicer arietinum Ca_08440 I 0.884
Ca_14981 Cicer arietinum Ca_14981 N 0.846
Ca_18110 Cicer arietinum Ca_18110 N 0.842
Ca_24775 Cicer arietinum Ca_24775 I 0.914
Cla013823 Citrullus lanatus Cla013823 I 0.853
Cla000223 Citrullus lanatus Cla000223 I 0.914
Cla019007 Citrullus lanatus Cla019007 I 0.853
Cla020671 Citrullus lanatus Cla020671 I 0.884
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.884
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I 0.852
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I 0.853
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.884
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I 0.853
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I 0.840
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I 0.852
Cucsa.350940 Cucumis sativus Cucsa.350940 I 0.853
Cucsa.132830 Cucumis sativus Cucsa.132830 I 0.853
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.884
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.884
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I 0.853
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I 0.853
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I 0.853
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I 0.894
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I 0.853
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I 0.914
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I 0.853
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I 0.853
GLYMA01G22530 Glycine max GLYMA01G22530 I 0.914
GLYMA02G11190 Glycine max GLYMA02G11190 I 0.914
GLYMA09G14380 Glycine max GLYMA09G14380 I 0.853
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.884
GLYMA02G36380 Glycine max GLYMA02G36380 I 0.853
GLYMA15G33020 Glycine max GLYMA15G33020 I 0.853
GLYMA17G08300 Glycine max GLYMA17G08300 I 0.853
GLYMA17G19570 Glycine max GLYMA17G19570 I 0.840
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.884
GLYMA01G02930 Glycine max GLYMA01G02930 N 0.842
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N 0.847
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N 0.842
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.884
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I 0.853
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.884
MLOC_12832 Hordeum vulgare MLOC_12832 N 0.858
MLOC_66385 Hordeum vulgare MLOC_66385 I 0.894
MLOC_38567 Hordeum vulgare MLOC_38567 I 0.853
LPERR02G29460 Leersia perrieri LPERR02G29460 I 0.853
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.894
LPERR08G12910 Leersia perrieri LPERR08G12910 I 0.870
LPERR09G06880 Leersia perrieri LPERR09G06880 I 0.870
LPERR09G07210 Leersia perrieri LPERR09G07210 I 0.853
Lus10034271.g Linum usitatissimum Lus10034271.g I 0.870
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.884
Lus10021846.g Linum usitatissimum Lus10021846.g I 0.853
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.884
Lus10041493.g Linum usitatissimum Lus10041493.g I 0.870
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I 0.914
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I 0.853
MDP0000121522 Malus domestica MDP0000121522 I 0.853
MDP0000271420 Malus domestica MDP0000271420 I 0.884
MDP0000319726 Malus domestica MDP0000319726 I 0.884
MDP0000534784 Malus domestica MDP0000534784 I 0.853
MDP0000606021 Malus domestica MDP0000606021 I 0.840
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I 0.853
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I 0.853
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.884
cassava16550.m1 Manihot esculenta cassava16550.m1 I 0.884
MTR_4g131160 Medicago truncatula MTR_4g131160 I 0.853
MTR_5g066080 Medicago truncatula MTR_5g066080 N 0.846
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.884
mgf017635m Mimulus guttatus mgf017635m I 0.884
mg025182m Mimulus guttatus mg025182m I 0.840
mgf009435m Mimulus guttatus mgf009435m I 0.853
mgf014585m Mimulus guttatus mgf014585m I 0.853
mgf001459m Mimulus guttatus mgf001459m I 0.853
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I 0.894
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.864
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I 0.853
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.864
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I 0.853
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.846
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I 0.853
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I 0.894
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I 0.853
OBART03G11320 Oryza barthii OBART03G11320 I 0.894
OBART06G05420 Oryza barthii OBART06G05420 I 0.853
OBART08G15650 Oryza barthii OBART08G15650 I 0.870
OB03G21490 Oryza brachyantha OB03G21490 I 0.894
OB06G14990 Oryza brachyantha OB06G14990 I 0.853
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I 0.853
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I 0.870
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.894
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.894
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I 0.853
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I 0.853
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I 0.853
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I 0.870
BGIOSGA021777 Oryza indica BGIOSGA021777 I 0.853
BGIOSGA029777 Oryza indica BGIOSGA029777 I 0.870
BGIOSGA029759 Oryza indica BGIOSGA029759 I 0.853
BGIOSGA026937 Oryza indica BGIOSGA026937 I 0.870
OLONG_011765 Oryza longistaminata OLONG_011765 N 0.848
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.894
OMERI02G33790 Oryza meridionalis OMERI02G33790 I 0.853
OMERI08G12930 Oryza meridionalis OMERI08G12930 I 0.870
OMERI09G07780 Oryza meridionalis OMERI09G07780 I 0.870
ONIVA09G09550 Oryza nivara ONIVA09G09550 I 0.870
ONIVA02G37880 Oryza nivara ONIVA02G37880 I 0.853
ONIVA08G16750 Oryza nivara ONIVA08G16750 I 0.870
ONIVA09G10010 Oryza nivara ONIVA09G10010 I 0.853
ONIVA06G06250 Oryza nivara ONIVA06G06250 I 0.853
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.894
OPUNC08G13730 Oryza punctata OPUNC08G13730 I 0.870
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I 0.853
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I 0.853
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.894
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I 0.870
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I 0.870
OS03G0260600 Oryza sativa OS03G0260600 I 0.894
OS06G0184000 Oryza sativa OS06G0184000 I 0.853
OS09G0410700 Oryza sativa OS09G0410700 I 0.870
OS08G0432800 Oryza sativa OS08G0432800 I 0.870
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I 0.853
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I 0.853
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N 0.847
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N 0.847
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I 0.853
Pavir.J04712 Panicum virgatum Pavir.J04712 I 0.853
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.894
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I 0.853
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I 0.853
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D 0.853
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I 0.853
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I 0.853
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.884
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.884
Pm029004 Prunus mume Pm029004 I 0.884
Pm027715 Prunus mume Pm027715 I 0.853
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.884
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I 0.853
30068.m002581 Ricinus communis 30068.m002581 I 0.850
29737.m001209 Ricinus communis 29737.m001209 I 0.853
29738.m001043 Ricinus communis 29738.m001043 I 0.884
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.884
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I 0.853
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.884
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.884
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I 0.853
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I 0.894
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.884
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I 0.853
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I 0.853
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I 0.894
SELMODRAFT_24890 Selaginella moellendorffii SELMODRAFT_24890 I 0.841
SELMODRAFT_24892 Selaginella moellendorffii SELMODRAFT_24892 I 0.841
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.884
Si013911m.g Setaria italica Si013911m.g I 0.870
Si039730m.g Setaria italica Si039730m.g I 0.894
Si030496m.g Setaria italica Si030496m.g N 0.858
Si029708m.g Setaria italica Si029708m.g I 0.853
Si017553m.g Setaria italica Si017553m.g I 0.853
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I 0.853
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I 0.865
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N 0.858
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I 0.914
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I 0.840
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I 0.914
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.884
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I 0.853
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I 0.853
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N 0.858
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I 0.914
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.894
Sb02g024460 Sorghum bicolor Sb02g024460 N 0.858
Sb07g021170 Sorghum bicolor Sb07g021170 I 0.870
Sb10g005650 Sorghum bicolor Sb10g005650 I 0.853
Sb04g035890 Sorghum bicolor Sb04g035890 I 0.853
Sb02g024750 Sorghum bicolor Sb02g024750 I 0.853
TCM_011873 Theobroma cacao TCM_011873 I 0.884
TCM_037077 Theobroma cacao TCM_037077 I 0.853
TCM_000997 Theobroma cacao TCM_000997 N 0.842
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I 0.853
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N 0.858
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I 0.894
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I 0.894
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I 0.894
TRIUR3_31897 Triticum urartu TRIUR3_31897 I 0.894
TRIUR3_33768 Triticum urartu TRIUR3_33768 I 0.853
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.884
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.842
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I 0.853
GRMZM2G107276 Zea mays GRMZM2G107276 I 0.870
GRMZM2G526668 Zea mays GRMZM2G526668 I 0.870
GRMZM2G350165 Zea mays GRMZM2G350165 I 0.841
GRMZM2G027563 Zea mays GRMZM2G027563 I 0.853
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.894
GRMZM2G067654 Zea mays GRMZM2G067654 I 0.853
GRMZM2G176141 Zea mays GRMZM2G176141 N 0.858