CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra000283
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra000283
T031334_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN
NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.898
0.840
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN
NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.898
0.840
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM
KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.898
0.840
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.898
0.840
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.898
0.840
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.898
0.840
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.888
0.640
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.888
0.620
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN
NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.887
0.800
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV
BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.884
0.940
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS
SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.871
0.920
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.871
0.920
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.871
0.840
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.871
0.840
PIF1
M09783_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.871
0.840
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.856
0.660
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra000283.1-P
bHLH
248
297
AAEVHNLSERRRRDRINERMKALQELIPNCIKTDKASILEEAIDYLKSLQ
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
620 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy