CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra004338
(
Brassica rapa
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
Bra004338
T031359_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK07858.1
M01123_2.00
Cannabis sativa
HCACGTGB
VCACGTGD
PBM
Lambert et al.(2019)
pTH11370
0.884
0.960
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.853
0.500
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.853
0.500
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra004338.1-P
bHLH
162
211
ASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLLAEVIQHVKELK
Links
Other
bHLH
family TFs
Other
Brassica rapa
TFs
263 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy