Bra004678 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra004678 T031367_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.879 0.980
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.856 0.922
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.856 0.922
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004678.1-P bHLH 253 303

Links

Other bHLH family TFs
Other Brassica rapa TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cla006394 Citrullus lanatus Cla006394 I 0.914
mgf016092m Mimulus guttatus mgf016092m I 0.914
MTR_4g065870 Medicago truncatula MTR_4g065870 I 0.914
Cucsa.143260 Cucumis sativus Cucsa.143260 I 0.914
Ca_18899 Cicer arietinum Ca_18899 I 0.914
MTR_1g052470 Medicago truncatula MTR_1g052470 I 0.914
Bo4g015860 Brassica oleracea Bo4g015860 I 0.914
Traes_5BL_4317E525B Triticum aestivum Traes_5BL_4317E525B I 0.902
GRMZM2G142932 Zea mays GRMZM2G142932 I 0.902
Pavir.J25484 Panicum virgatum Pavir.J25484 I 0.902
Sb07g027810 Sorghum bicolor Sb07g027810 I 0.902
GRMZM2G153454 Zea mays GRMZM2G153454 I 0.902
Pavir.Fa00493 Panicum virgatum Pavir.Fa00493 I 0.902
Pavir.Ba00676 Panicum virgatum Pavir.Ba00676 I 0.902
MLOC_30102 Hordeum vulgare MLOC_30102 I 0.902
BRADI4G33670 Brachypodium distachyon BRADI4G33670 I 0.902
Si030166m.g Setaria italica Si030166m.g I 0.902
Si013950m.g Setaria italica Si013950m.g I 0.902
Pavir.Bb03157 Panicum virgatum Pavir.Bb03157 I 0.902
e_gw1.83.237.1 Physcomitrella patens e_gw1.83.237.1 I 0.893
MDP0000307685 Malus domestica MDP0000307685 I 0.879
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.879
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.879
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.879
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.879
30169.m006403 Ricinus communis 30169.m006403 I 0.879
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.879
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.879
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.879
GRMZM5G879527 Zea mays GRMZM5G879527 N 0.872
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.867
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.867
estExt_fgenesh1_pg.C_2130035 Physcomitrella patens estExt_fgenesh1_pg.C_2130035 N 0.863
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.858
Ca_14223 Cicer arietinum Ca_14223 I 0.856
Ca_02662 Cicer arietinum Ca_02662 I 0.856
TCM_040564 Theobroma cacao TCM_040564 I 0.856
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.856
BHLH122 Arabidopsis thaliana AT1G51140 D 0.856
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.856
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.856
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.856
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.856
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.856
Bra018896 Brassica rapa Bra018896 I 0.856
Bo4g191390 Brassica oleracea Bo4g191390 I 0.856
Bo6g024810 Brassica oleracea Bo6g024810 I 0.856
Bra016886 Brassica rapa Bra016886 I 0.856
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.856
PK20089.1 Cannabis sativa PK20089.1 I 0.856
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.856
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.856
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.856
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.856
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.856
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.856
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.856
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.856
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.851
OB04G24170 Oryza brachyantha OB04G24170 I 0.851
OBART04G16900 Oryza barthii OBART04G16900 I 0.851
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.851
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.851
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.851
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.851
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.851
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.851
OS04G0489600 Oryza sativa OS04G0489600 I 0.851
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.851
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.851
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.851
Ca_07284 Cicer arietinum Ca_07284 I 0.846
e_gw1.272.41.1 Physcomitrella patens e_gw1.272.41.1 I 0.845
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.844
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.844
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.844
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.844
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.844
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.844
Si029614m.g Setaria italica Si029614m.g I 0.844
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.844
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.844
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.840