Bra004748 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra004748 T031369_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN

NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.866 0.804
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH

DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.845 0.745
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA

TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.845 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra004748.1-P bHLH 235 285

Links

Other bHLH family TFs
Other Brassica rapa TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_24151 Aegilops tauschii F775_24151 I 0.866
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.866
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.894
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.914
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.856
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.845
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.845
BHLH81 Arabidopsis thaliana AT4G09180 I 0.845
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.914
BHLH80 Arabidopsis thaliana AT1G35460 D 0.845
BHLH128 Arabidopsis thaliana AT1G05805 I 0.856
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.914
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.845
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.856
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.845
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.866
Bo4g194080 Brassica oleracea Bo4g194080 N 0.876
Bo3g036400 Brassica oleracea Bo3g036400 I 0.914
Bo4g019620 Brassica oleracea Bo4g019620 I 0.914
Bo5g006980 Brassica oleracea Bo5g006980 I 0.853
Bo8g026850 Brassica oleracea Bo8g026850 I 0.845
Bo6g043840 Brassica oleracea Bo6g043840 I 0.845
Bo5g007030 Brassica oleracea Bo5g007030 I 0.853
Bra028088 Brassica rapa Bra028088 I 0.845
Bra000291 Brassica rapa Bra000291 I 0.914
Bra015456 Brassica rapa Bra015456 I 0.853
Bra037732 Brassica rapa Bra037732 N 0.876
Bra036760 Brassica rapa Bra036760 I 0.845
PK18038.1 Cannabis sativa PK18038.1 I 0.866
PK07850.1 Cannabis sativa PK07850.1 I 0.914
PK06301.1 Cannabis sativa PK06301.1 I 0.845
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.845
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.914
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.856
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.845
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.914
Carubv10009382m.g Capsella rubella Carubv10009382m.g I 0.856
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.845
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.845
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.879
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.866
Ca_14007 Cicer arietinum Ca_14007 I 0.856
Cla015469 Citrullus lanatus Cla015469 I 0.846
Cla017792 Citrullus lanatus Cla017792 I 0.866
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.866
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.845
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.845
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.866
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.856
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.846
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.845
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.866
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.853
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.866
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.845
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.856
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.914
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.866
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.866
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.845
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.845
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.866
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.846
GLYMA12G36750 Glycine max GLYMA12G36750 I 0.846
GLYMA13G27455 Glycine max GLYMA13G27455 I 0.846
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.914
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.866
Gorai.004G035800 Gossypium raimondii Gorai.004G035800 I 0.843
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.845
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.914
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.866
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.866
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.894
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.866
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.866
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.853
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.853
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.866
chr1.CM0318.250.nd Lotus japonicus chr1.CM0318.250.nd I 0.841
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.914
MDP0000269890 Malus domestica MDP0000269890 I 0.845
MDP0000273574 Malus domestica MDP0000273574 I 0.914
MDP0000180376 Malus domestica MDP0000180376 I 0.866
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.866
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.911
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.864
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.866
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.845
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.866
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.866
MTR_3g028520 Medicago truncatula MTR_3g028520 I 0.846
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.856
MTR_3g027650 Medicago truncatula MTR_3g027650 I 0.846
mgf002701m Mimulus guttatus mgf002701m I 0.845
mgf005043m Mimulus guttatus mgf005043m I 0.914
mgf016734m Mimulus guttatus mgf016734m I 0.866
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.855
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.866
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.883
OBART09G14660 Oryza barthii OBART09G14660 I 0.866
OBART08G19860 Oryza barthii OBART08G19860 I 0.866
OBART02G23210 Oryza barthii OBART02G23210 I 0.894
OB02G30670 Oryza brachyantha OB02G30670 I 0.894
OB08G26810 Oryza brachyantha OB08G26810 I 0.866
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.866
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.866
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.894
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.866
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.866
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.866
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.894
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.866
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.866
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.894
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.866
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.866
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.894
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.866
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.894
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.866
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.866
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.894
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.866
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.866
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.866
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.894
OS08G0506700 Oryza sativa OS08G0506700 D 0.866
OS09G0487900 Oryza sativa OS09G0487900 I 0.866
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.894
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.894
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.883
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.894
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.894
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.881
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.866
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.881
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.866
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.866
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.864
Pm004181 Prunus mume Pm004181 I 0.845
Pm000447 Prunus mume Pm000447 I 0.866
Pm007619 Prunus mume Pm007619 I 0.914
Pm025821 Prunus mume Pm025821 I 0.866
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.914
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.845
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.866
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.866
30149.m000231 Ricinus communis 30149.m000231 I 0.911
30152.m002405 Ricinus communis 30152.m002405 I 0.864
29216.m000261 Ricinus communis 29216.m000261 I 0.866
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.877
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.845
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.866
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.877
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.866
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.893
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.893
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.914
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.845
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.845
Si017194m.g Setaria italica Si017194m.g I 0.864
Si010513m.g Setaria italica Si010513m.g I 0.894
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.914
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.864
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.845
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.866
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.914
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.866
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.845
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.864
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.894
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.894
TCM_024842 Theobroma cacao TCM_024842 I 0.866
TCM_036484 Theobroma cacao TCM_036484 I 0.845
TCM_020066 Theobroma cacao TCM_020066 I 0.914
TCM_005925 Theobroma cacao TCM_005925 I 0.843
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.866
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.866
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.866
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.866
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.914
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.864
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.845
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.894