Bra014923 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra014923 T031430_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.856 0.788
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.856 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra014923.1-P bHLH 133 184

Links

Other bHLH family TFs
Other Brassica rapa TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo7g040830 Brassica oleracea Bo7g040830 I 0.914
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.879
Bo4g126940 Brassica oleracea Bo4g126940 I 0.879
Bo1g102270 Brassica oleracea Bo1g102270 I 0.879
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.876
PRUPE_ppa011217mg Prunus persica PRUPE_ppa011217mg I 0.863
orange1.1g028060m.g Citrus sinensis orange1.1g028060m.g I 0.863
Ciclev10005872m.g Citrus clementina Ciclev10005872m.g I 0.863
Bra041033 Brassica rapa Bra041033 I 0.859
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.856
BHLH104 Arabidopsis thaliana AT4G14410 D 0.856
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.856
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.856
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.856
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.856
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.852
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.852
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.852
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.839
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.839
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.839
Cucsa.255290 Cucumis sativus Cucsa.255290 I 0.839
Cla021854 Citrullus lanatus Cla021854 I 0.839
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.839
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.839