Bra025508 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra025508 T031498_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK03576.1
M01119_2.00 		Cannabis sativa
NCACGTGCN
NGCACGTGN		 PBM
Lambert et al.(2019)
pTH10095 		0.861 0.633
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025508.1-P bHLH 436 485

Links

Other bHLH family TFs
Other Brassica rapa TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g141990 Brassica oleracea Bo4g141990 I 0.914
Thhalv10027709m.g Eutrema salsugineum Thhalv10027709m.g I 0.901
Carubv10004345m.g Capsella rubella Carubv10004345m.g I 0.901
Bostr.7200s0145 Boechera stricta Bostr.7200s0145 I 0.901
GL3 Arabidopsis lyrata fgenesh2_kg.7__3280__AT5G41315.1 I 0.901
GL3 Arabidopsis thaliana AT5G41315 I 0.901
gene32494-v1.0-hybrid Fragaria vesca gene32494-v1.0-hybrid I 0.899
Pm023805 Prunus mume Pm023805 I 0.899
PRUPE_ppa002762mg Prunus persica PRUPE_ppa002762mg I 0.899
TCM_016261 Theobroma cacao TCM_016261 I 0.886
POPTR_0003s12810 Populus trichocarpa POPTR_0003s12810 I 0.879
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.878
Cagra.2104s0007 Capsella grandiflora Cagra.2104s0007 N 0.877
Bostr.29223s0199 Boechera stricta Bostr.29223s0199 N 0.877
Carubv10019965m.g Capsella rubella Carubv10019965m.g N 0.877
mgf005803m Mimulus guttatus mgf005803m I 0.877
EGL3 Arabidopsis lyrata fgenesh2_kg.2__120__AT1G63650.2 N 0.877
BHLH2 Arabidopsis thaliana AT1G63650 N 0.877
Ca_05750 Cicer arietinum Ca_05750 I 0.875
GLYMA08G01810 Glycine max GLYMA08G01810 I 0.875
MTR_8g098275 Medicago truncatula MTR_8g098275 I 0.875
LjSGA_008146.1 Lotus japonicus LjSGA_008146.1 I 0.875
PK03576.1 Cannabis sativa PK03576.1 D 0.861
BHLH127 Arabidopsis thaliana AT4G28815 N 0.859
Bo9g029230 Brassica oleracea Bo9g029230 N 0.857
Bra027796 Brassica rapa Bra027796 N 0.857
Bra027653 Brassica rapa Bra027653 N 0.857
Thhalv10023356m.g Eutrema salsugineum Thhalv10023356m.g N 0.857
Gorai.007G023500 Gossypium raimondii Gorai.007G023500 N 0.856
GLYMA05G37770 Glycine max GLYMA05G37770 N 0.855
SapurV1A.0612s0160 Salix purpurea SapurV1A.0612s0160 N 0.854
Sb06g016380 Sorghum bicolor Sb06g016380 N 0.851
VIT_02s0025g03450 Vitis vinifera VIT_02s0025g03450 N 0.849
Bra037887 Brassica rapa Bra037887 N 0.845
Bo9g086920 Brassica oleracea Bo9g086920 N 0.845
Bo9g086910 Brassica oleracea Bo9g086910 N 0.845
TT8 Arabidopsis lyrata fgenesh2_kg.6__2968__AT4G09820.1 I 0.842
Cagra.1664s0001 Capsella grandiflora Cagra.1664s0001 I 0.842
Carubv10002462m.g Capsella rubella Carubv10002462m.g I 0.842
TT8 Arabidopsis thaliana AT4G09820 I 0.842
Bostr.25463s0338 Boechera stricta Bostr.25463s0338 I 0.842
evm.TU.supercontig_537.2 Carica papaya evm.TU.supercontig_537.2 N 0.840
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.840
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.838