Bra027080 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra027080 T031502_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra027080.1-P bHLH 251 291

Links

Other bHLH family TFs
Other Brassica rapa TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.914
Bo9g041010 Brassica oleracea Bo9g041010 N 0.914
Bra031413 Brassica rapa Bra031413 N 0.914
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.914
Carubv10020420m.g Capsella rubella Carubv10020420m.g N 0.914
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.914
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.914
Bo1g098400 Brassica oleracea Bo1g098400 N 0.914
BHLH112 Arabidopsis thaliana AT1G61660 N 0.914
cassava33658.m1 Manihot esculenta cassava33658.m1 N 0.891
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.876
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.876
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.876
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.876
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.876
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.876
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.876
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.876
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.876
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.876
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.876
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.876
OS04G0631600 Oryza sativa OS04G0631600 N 0.876
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.876
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.876
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.876
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.876
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.876
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.876
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.876
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.876
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.876
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.876
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.876
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.876
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.876
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.876
Ca_00214 Cicer arietinum Ca_00214 N 0.876
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.876
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.876
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.876
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.876
mgf016565m Mimulus guttatus mgf016565m N 0.876
mgf008488m Mimulus guttatus mgf008488m N 0.876
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.876
29842.m003704 Ricinus communis 29842.m003704 N 0.876
Pm009855 Prunus mume Pm009855 N 0.876
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.876
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.876
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.876
Si022548m.g Setaria italica Si022548m.g N 0.876
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.876
Si013853m.g Setaria italica Si013853m.g N 0.876
Si010139m.g Setaria italica Si010139m.g N 0.876
Si001796m.g Setaria italica Si001796m.g N 0.876
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.876
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.876
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.876
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.876
TCM_030051 Theobroma cacao TCM_030051 N 0.876
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.876
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.876
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.876
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.876
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.876
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.876
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.876
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.876
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.876
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.876
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.876
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.876
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.876
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.876
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.876
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.876
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.876
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.876
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.876
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.876
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.876
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.876
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.876
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.876
PK14284.1 Cannabis sativa PK14284.1 N 0.876
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.876
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.876
F775_20405 Aegilops tauschii F775_20405 N 0.876
F775_12027 Aegilops tauschii F775_12027 N 0.876
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.876
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.876
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.876
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.876
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.876
OBART04G24870 Oryza barthii OBART04G24870 N 0.876
OBART01G33360 Oryza barthii OBART01G33360 N 0.876
OB05G29420 Oryza brachyantha OB05G29420 N 0.876
OB08G14900 Oryza brachyantha OB08G14900 N 0.876
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.876
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.876
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.876
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.876
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.876
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.876
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.876
OB04G33270 Oryza brachyantha OB04G33270 N 0.876
OBART05G21860 Oryza barthii OBART05G21860 N 0.876
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.876
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.876
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.876
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.876
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.876
MDP0000301999 Malus domestica MDP0000301999 N 0.876
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.876
mgf001258m Mimulus guttatus mgf001258m N 0.875
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.875
PK22680.1 Cannabis sativa PK22680.1 N 0.875
MDP0000295440 Malus domestica MDP0000295440 N 0.875
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.875
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.875
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.875
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.875
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.875
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.875
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.875
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.875
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.875
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.875
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.875
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.875
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.875
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.875
MDP0000296508 Malus domestica MDP0000296508 N 0.875
TCM_031172 Theobroma cacao TCM_031172 N 0.875
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.875
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.875
Bra001798 Brassica rapa Bra001798 N 0.875
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.875
Ca_19891 Cicer arietinum Ca_19891 N 0.875
Ca_06936 Cicer arietinum Ca_06936 N 0.875
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.875
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.875
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.875
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.875
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.875
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.875
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.875
Cla003883 Citrullus lanatus Cla003883 N 0.875
Bo3g076150 Brassica oleracea Bo3g076150 N 0.875
BHLH123 Arabidopsis thaliana AT3G20640 N 0.875
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.875
27733.m000033 Ricinus communis 27733.m000033 N 0.875
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.875
Pm011692 Prunus mume Pm011692 N 0.875
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.875
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.875
Bo01052s010 Brassica oleracea Bo01052s010 N 0.875
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.863
Bra035761 Brassica rapa Bra035761 N 0.862
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.856
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.852
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.852
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.852
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.852
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.852
MDP0000262020 Malus domestica MDP0000262020 N 0.852
MDP0000687814 Malus domestica MDP0000687814 N 0.852
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.852
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.852
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.852
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.852
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.852
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.852
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.852
MDP0000168695 Malus domestica MDP0000168695 N 0.852
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.852
Pm005865 Prunus mume Pm005865 N 0.852
Cla021101 Citrullus lanatus Cla021101 N 0.852
mgf013138m Mimulus guttatus mgf013138m N 0.852
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.852
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.852
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.852
30170.m014085 Ricinus communis 30170.m014085 N 0.852
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.852
BHLH110 Arabidopsis thaliana AT1G27660 N 0.852
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.852
Ca_04928 Cicer arietinum Ca_04928 N 0.852
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.852
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.852
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.852
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.852
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.852
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.852
TCM_034098 Theobroma cacao TCM_034098 N 0.852
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.852
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.852
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.851
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.851
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.850
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.844
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.844
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.844
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.844
Pm007388 Prunus mume Pm007388 N 0.844
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.844
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.844
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.844
TCM_019871 Theobroma cacao TCM_019871 N 0.844
28405.m000015 Ricinus communis 28405.m000015 N 0.844
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.841
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.841
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.841
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.841
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.841
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.841