Bra029562 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra029562 T031517_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029562.1-P bHLH 161 201

Links

Other bHLH family TFs
Other Brassica rapa TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.914
Bo9g076250 Brassica oleracea Bo9g076250 N 0.914
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.902
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.902
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.902
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.902
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.902
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.902
30170.m014085 Ricinus communis 30170.m014085 N 0.891
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.891
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.891
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.891
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.891
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.891
TCM_034098 Theobroma cacao TCM_034098 N 0.891
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.891
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.891
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.891
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.891
Cla021101 Citrullus lanatus Cla021101 N 0.891
MDP0000168695 Malus domestica MDP0000168695 N 0.891
MDP0000262020 Malus domestica MDP0000262020 N 0.891
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.891
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.891
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.891
Ca_04928 Cicer arietinum Ca_04928 N 0.891
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.891
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.891
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.891
Pm005865 Prunus mume Pm005865 N 0.891
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.891
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.891
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.891
MDP0000687814 Malus domestica MDP0000687814 N 0.891
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.891
Ciclev10001291m.g Citrus clementina Ciclev10001291m.g N 0.891
BHLH110 Arabidopsis thaliana AT1G27660 N 0.891
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.891
mgf013138m Mimulus guttatus mgf013138m N 0.891
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.891
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.891
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.891
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.891
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.891
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.889
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N 0.881
Carubv10006994m.g Capsella rubella Carubv10006994m.g N 0.881
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.871
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.870
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.870
Bra013520 Brassica rapa Bra013520 N 0.870
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N 0.870
BHLH103 Arabidopsis thaliana AT4G21340 N 0.870
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.867
TCM_030051 Theobroma cacao TCM_030051 N 0.867
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.867
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.867
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.867
MDP0000301999 Malus domestica MDP0000301999 N 0.867
Si001796m.g Setaria italica Si001796m.g N 0.867
Si010139m.g Setaria italica Si010139m.g N 0.867
Si013853m.g Setaria italica Si013853m.g N 0.867
Si022548m.g Setaria italica Si022548m.g N 0.867
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.867
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.867
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.867
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.867
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.867
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.867
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.867
29842.m003704 Ricinus communis 29842.m003704 N 0.867
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.867
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.867
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.867
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.867
mgf016565m Mimulus guttatus mgf016565m N 0.867
mgf008488m Mimulus guttatus mgf008488m N 0.867
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.867
Pm009855 Prunus mume Pm009855 N 0.867
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.867
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.867
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.867
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.867
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.867
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.867
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.867
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.867
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.867
Ca_00214 Cicer arietinum Ca_00214 N 0.867
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.867
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.867
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.867
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.867
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.867
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.867
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.867
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.867
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.867
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.867
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.867
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.867
OB05G29420 Oryza brachyantha OB05G29420 N 0.867
OB08G14900 Oryza brachyantha OB08G14900 N 0.867
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.867
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.867
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.867
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.867
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.867
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.867
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.867
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.867
PK14284.1 Cannabis sativa PK14284.1 N 0.867
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.867
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.867
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.867
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.867
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.867
F775_12027 Aegilops tauschii F775_12027 N 0.867
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.867
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.867
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.867
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.867
F775_20405 Aegilops tauschii F775_20405 N 0.867
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.867
OBART01G33360 Oryza barthii OBART01G33360 N 0.867
OB04G33270 Oryza brachyantha OB04G33270 N 0.867
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.867
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.867
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.867
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.867
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.867
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.867
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.867
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.867
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.867
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.867
OS04G0631600 Oryza sativa OS04G0631600 N 0.867
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.867
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.867
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.867
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.867
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.867
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.867
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.867
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.867
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.867
OBART04G24870 Oryza barthii OBART04G24870 N 0.867
OBART05G21860 Oryza barthii OBART05G21860 N 0.867
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.867
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.867
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.867
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.867
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.867
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.867
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.867
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.867
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.866
PK22680.1 Cannabis sativa PK22680.1 N 0.866
MDP0000295440 Malus domestica MDP0000295440 N 0.866
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.866
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.866
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.866
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.866
MDP0000296508 Malus domestica MDP0000296508 N 0.866
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.866
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.866
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.866
TCM_031172 Theobroma cacao TCM_031172 N 0.866
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.866
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.866
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.866
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.866
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.866
Ca_06936 Cicer arietinum Ca_06936 N 0.866
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.866
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.866
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.866
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.866
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.866
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.866
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.866
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.866
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.866
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.866
Cla003883 Citrullus lanatus Cla003883 N 0.866
Ca_19891 Cicer arietinum Ca_19891 N 0.866
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.866
BHLH123 Arabidopsis thaliana AT3G20640 N 0.866
mgf001258m Mimulus guttatus mgf001258m N 0.866
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.866
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.866
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.866
Bo01052s010 Brassica oleracea Bo01052s010 N 0.866
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.866
Bo3g076150 Brassica oleracea Bo3g076150 N 0.866
27733.m000033 Ricinus communis 27733.m000033 N 0.866
Pm011692 Prunus mume Pm011692 N 0.866
Bra001798 Brassica rapa Bra001798 N 0.866
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.866
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.864
Bo3g026410 Brassica oleracea Bo3g026410 N 0.857
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.855
Bra035761 Brassica rapa Bra035761 N 0.853
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.847
BHLH154 Arabidopsis thaliana AT2G31730 N 0.847
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.847
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.847
28405.m000015 Ricinus communis 28405.m000015 N 0.847
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.847
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.847
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.847
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.847
Pm007388 Prunus mume Pm007388 N 0.847
TCM_019871 Theobroma cacao TCM_019871 N 0.847
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.847
Bo1g024090 Brassica oleracea Bo1g024090 N 0.846
Bra005644 Brassica rapa Bra005644 N 0.846
Bo4g049510 Brassica oleracea Bo4g049510 N 0.846
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.846
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.842
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.842