Bra039927 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra039927 T031576_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.843 0.714
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra039927.1-P bHLH 126 174

Links

Other bHLH family TFs
Other Brassica rapa TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bo8g100870 Brassica oleracea Bo8g100870 I 0.914
Bo4g151030 Brassica oleracea Bo4g151030 I 0.914
Bra030207 Brassica rapa Bra030207 I 0.914
Thhalv10000251m.g Eutrema salsugineum Thhalv10000251m.g N 0.888
Carubv10023610m.g Capsella rubella Carubv10023610m.g N 0.875
NAI1 Arabidopsis lyrata fgenesh2_kg.4__198__AT2G22770.1 N 0.875
Cagra.0882s0006 Capsella grandiflora Cagra.0882s0006 N 0.875
Bostr.19427s0044 Boechera stricta Bostr.19427s0044 N 0.875
NAI1 Arabidopsis thaliana AT2G22770 N 0.875
Eucgr.H02391 Eucalyptus grandis Eucgr.H02391 I 0.864
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.863
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.863
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.863
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.863
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.863
Pm002304 Prunus mume Pm002304 I 0.863
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.863
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.863
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.863
F775_11371 Aegilops tauschii F775_11371 I 0.863
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.863
Bostr.25542s0234 Boechera stricta Bostr.25542s0234 I 0.856
Ca_02264 Cicer arietinum Ca_02264 I 0.851
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.851
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.851
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.845
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.845
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.845
MDP0000318216 Malus domestica MDP0000318216 I 0.845
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.844
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.843
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.843
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.843
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.843
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.843
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.843
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.843
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.843
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.843
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.843
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.843
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.843
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.843
PK09122.1 Cannabis sativa PK09122.1 I 0.843
PK11573.1 Cannabis sativa PK11573.1 I 0.843
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.843
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.843
MDP0000174149 Malus domestica MDP0000174149 I 0.843
MDP0000170202 Malus domestica MDP0000170202 I 0.843
MDP0000159571 Malus domestica MDP0000159571 I 0.843
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.843
MDP0000291132 Malus domestica MDP0000291132 I 0.843
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.843
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.843
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.843
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.843
MDP0000502440 Malus domestica MDP0000502440 I 0.843
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.843
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.843
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.843
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.843
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.843
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.843
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.843
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.843
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.843
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.843
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.843
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.843
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.843
28179.m000478 Ricinus communis 28179.m000478 I 0.843
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.843
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.843
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.843
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.843
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.843
OS03G0725800 Oryza sativa OS03G0725800 I 0.843
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.843
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.843
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.843
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.843
29804.m001498 Ricinus communis 29804.m001498 I 0.843
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.843
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.843
OBART03G32580 Oryza barthii OBART03G32580 I 0.843
Bra030210 Brassica rapa Bra030210 I 0.843
Bra039924 Brassica rapa Bra039924 I 0.843
Bo4g150960 Brassica oleracea Bo4g150960 I 0.843
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.843
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.843
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.843
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.843
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.843
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.843
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.843
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.843
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.843
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.843
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.843
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.843
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.843
TCM_000895 Theobroma cacao TCM_000895 I 0.843
TCM_000894 Theobroma cacao TCM_000894 I 0.843
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.843
Cla000123 Citrullus lanatus Cla000123 I 0.843
28179.m000479 Ricinus communis 28179.m000479 I 0.843
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.843
Pm021008 Prunus mume Pm021008 I 0.843
Pm002305 Prunus mume Pm002305 I 0.843
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.843
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.843
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.843
Si036393m.g Setaria italica Si036393m.g I 0.843
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.843
fgenesh1_pg.scaffold_4000056 Physcomitrella patens fgenesh1_pg.scaffold_4000056 N 0.842
e_gw1.130.107.1 Physcomitrella patens e_gw1.130.107.1 N 0.842
fgenesh1_pg.scaffold_57000137 Physcomitrella patens fgenesh1_pg.scaffold_57000137 N 0.842
fgenesh2_pg.scaffold_77000085 Physcomitrella patens fgenesh2_pg.scaffold_77000085 N 0.842
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.841
Bo1g017100 Brassica oleracea Bo1g017100 N 0.841
Sb08g020320 Sorghum bicolor Sb08g020320 N 0.840
OPUNC12G16280 Oryza punctata OPUNC12G16280 N 0.840
Sb08g020300 Sorghum bicolor Sb08g020300 N 0.840
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.840
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.840
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.840
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.840
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.840
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.840
Si024602m.g Setaria italica Si024602m.g N 0.840
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.840
TCM_006357 Theobroma cacao TCM_006357 I 0.840
Sb08g020290 Sorghum bicolor Sb08g020290 N 0.840
GRMZM2G165090 Zea mays GRMZM2G165090 N 0.840
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.839
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.839
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.839