BRADI3G56340 (Brachypodium distachyon)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 BRADI3G56340 T031686_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.876 0.824
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.876 0.824
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.876 0.824
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.876 0.824
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.856 0.725
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.856 0.725
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.856 0.725
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.846 0.804
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.843 0.490
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G56340.1 bHLH 167 217

Links

Other bHLH family TFs
Other Brachypodium distachyon TFs

201 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.914
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.914
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.914
Si016505m.g Setaria italica Si016505m.g I 0.884
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.884
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.884
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.884
OB02G38020 Oryza brachyantha OB02G38020 I 0.884
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.884
OS02G0726700 Oryza sativa OS02G0726700 I 0.884
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.884
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.884
Bra029354 Brassica rapa Bra029354 I 0.876
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.876
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.876
Bra009322 Brassica rapa Bra009322 I 0.876
mgf001137m Mimulus guttatus mgf001137m I 0.876
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.876
mgf005849m Mimulus guttatus mgf005849m I 0.876
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.876
Bra005969 Brassica rapa Bra005969 I 0.876
Bo3g004690 Brassica oleracea Bo3g004690 I 0.876
Bo2g161110 Brassica oleracea Bo2g161110 I 0.876
BIM1 Arabidopsis thaliana AT5G08130 D 0.876
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.876
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.876
PK10562.1 Cannabis sativa PK10562.1 I 0.876
Bo9g174770 Brassica oleracea Bo9g174770 I 0.876
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.876
Bo5g020460 Brassica oleracea Bo5g020460 I 0.876
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.870
GRMZM2G024530 Zea mays GRMZM2G024530 I 0.863
GRMZM2G116785 Zea mays GRMZM2G116785 I 0.863
Sb10g006250 Sorghum bicolor Sb10g006250 I 0.863
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.863
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I 0.863
Si006332m.g Setaria italica Si006332m.g I 0.863
Pavir.J15280 Panicum virgatum Pavir.J15280 I 0.863
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I 0.863
Cla018818 Citrullus lanatus Cla018818 I 0.858
TCM_011433 Theobroma cacao TCM_011433 I 0.856
mgf011829m Mimulus guttatus mgf011829m I 0.856
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.856
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.856
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.856
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.856
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.856
Bra038332 Brassica rapa Bra038332 I 0.856
BIM2 Arabidopsis thaliana AT1G69010 D 0.856
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.856
Bo6g108530 Brassica oleracea Bo6g108530 I 0.856
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.856
Bo2g062560 Brassica oleracea Bo2g062560 I 0.856
Bra004355 Brassica rapa Bra004355 I 0.856
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.856
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.856
OMERI02G20700 Oryza meridionalis OMERI02G20700 I 0.851
ORGLA02G0180000 Oryza glaberrima ORGLA02G0180000 I 0.851
BGIOSGA006236 Oryza indica BGIOSGA006236 I 0.851
ONIVA02G23040 Oryza nivara ONIVA02G23040 I 0.851
OLONG_025501 Oryza longistaminata OLONG_025501 I 0.851
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.851
OGLUM02G21200 Oryza glumaepatula OGLUM02G21200 I 0.851
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.851
OPUNC02G18940 Oryza punctata OPUNC02G18940 I 0.851
OB02G28530 Oryza brachyantha OB02G28530 I 0.851
OBART02G20940 Oryza barthii OBART02G20940 I 0.851
OS02G0564700 Oryza sativa OS02G0564700 I 0.851
ORUFI02G21960 Oryza rufipogon ORUFI02G21960 I 0.851
Sb04g023320 Sorghum bicolor Sb04g023320 I 0.850
GRMZM5G839518 Zea mays GRMZM5G839518 I 0.850
Pavir.Aa01634 Panicum virgatum Pavir.Aa01634 I 0.850
Pavir.Ab02747 Panicum virgatum Pavir.Ab02747 I 0.850
Si016939m.g Setaria italica Si016939m.g I 0.850
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.850
OS08G0490000 Oryza sativa OS08G0490000 I 0.848
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.848
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.848
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.848
Si013622m.g Setaria italica Si013622m.g I 0.848
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.848
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.848
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.848
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.848
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.848
OB08G25940 Oryza brachyantha OB08G25940 I 0.848
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.848
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.848
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.848
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.848
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.848
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.846
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.846
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.846
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.846
TCM_014392 Theobroma cacao TCM_014392 I 0.846
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.846
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.846
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.846
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.846
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.846
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.846
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.846
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.846
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.846
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.846
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.846
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.846
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.846
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.846
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.846
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.846
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.846
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.846
PK08539.1 Cannabis sativa PK08539.1 I 0.845
PK20816.1 Cannabis sativa PK20816.1 I 0.843
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.843
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.843
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.843
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.843
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.843
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.843
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.843
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.843
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.843
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.843
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.843
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.843
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.843
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.843
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.843
MDP0000439540 Malus domestica MDP0000439540 I 0.843
Bo3g042120 Brassica oleracea Bo3g042120 I 0.843
OS06G0193400 Oryza sativa OS06G0193400 I 0.843
Bo3g054850 Brassica oleracea Bo3g054850 I 0.843
Bra037312 Brassica rapa Bra037312 I 0.843
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.843
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.843
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.843
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.843
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.843
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.843
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.843
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.843
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.843
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.843
30174.m008814 Ricinus communis 30174.m008814 I 0.843
29739.m003684 Ricinus communis 29739.m003684 I 0.843
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.843
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.843
TCM_005607 Theobroma cacao TCM_005607 I 0.843
cassava19894.m1 Manihot esculenta cassava19894.m1 I 0.843
OBART06G06000 Oryza barthii OBART06G06000 I 0.843
Ca_22883 Cicer arietinum Ca_22883 I 0.843
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.843
TCM_037455 Theobroma cacao TCM_037455 I 0.843
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.843
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.843
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.843
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.843
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.843
UNE10 Arabidopsis thaliana AT4G00050 D 0.843
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.843
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.843
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.843
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.843
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.843
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.843
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.843
mgf005431m Mimulus guttatus mgf005431m I 0.843
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.843
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.843
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.843
Bra000560 Brassica rapa Bra000560 I 0.843
e_gw1.167.42.1 Physcomitrella patens e_gw1.167.42.1 I 0.841
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.840
ALC Arabidopsis thaliana AT5G67110 I 0.840
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.840
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.840
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.840
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.840
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.840
TCM_004959 Theobroma cacao TCM_004959 I 0.840
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.840
Ca_19269 Cicer arietinum Ca_19269 I 0.840
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.840
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.840
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.840
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.840
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.840
OBART06G04330 Oryza barthii OBART06G04330 I 0.840
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.840
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.840
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.840
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.840
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.840
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.840
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.840
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.840
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.840
Bra012133 Brassica rapa Bra012133 I 0.840