TCF12 (Bos taurus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSBTAG00000002586 T033047_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB

VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.914 1.000
TCF12
M04137_2.00
Homo sapiens
VCACSTGB

VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.914 1.000
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN

NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.914 1.000
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB

VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.914 1.000
TCF12
M07806_2.00
Homo sapiens
VCASCTGB

VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.914 1.000
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH

DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.914 1.000
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH

DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.914 1.000
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB

VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.914 1.000
TCF12
M09858_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.914 1.000
TCF12
M09859_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.914 1.000
TCF12
M09860_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.914 1.000
TCF12
M09861_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.914 1.000
TCF12
M09862_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.914 1.000
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN

NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.914 1.000
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN

NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.914 0.885
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB

VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.914 0.885
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB

VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.914 0.885
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN

NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.912 0.962
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN

NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.912 0.962
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN

NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.912 0.962
TCF4
M02728_2.00
Homo sapiens
RCACCTG

CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.912 0.962
TCF4
M04214_2.00
Homo sapiens
VCACCTGB

VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.912 0.962
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB

VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.912 0.962
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN

NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.912 0.962
TCF4
M04215_2.00
Homo sapiens
VCACCTGN

NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.912 0.962
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS

SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.886 0.962
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN

NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.886 0.962
Tcf3
M09886_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.886 0.962
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN

NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886 0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN

NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886 0.923
TCF3
M09791_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886 0.923
TCF3
M09792_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886 0.923
TCF3
M09793_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886 0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB

VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886 0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN

NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000035793 bHLH 579 632

Links

Other bHLH family TFs
Other Bos taurus TFs

212 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_26732 Aegilops tauschii F775_26732 I 0.000
MYB92 Arabidopsis lyrata fgenesh2_kg.6__990__AT5G10280.1 I 0.000
MYB92 Arabidopsis thaliana AT5G10280 D 0.000
Bostr.13175s0070 Boechera stricta Bostr.13175s0070 I 0.000
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I 0.000
Bo9g172290 Brassica oleracea Bo9g172290 I 0.000
Bo3g005530 Brassica oleracea Bo3g005530 I 0.000
Bo2g009800 Brassica oleracea Bo2g009800 I 0.000
Bra006055 Brassica rapa Bra006055 I 0.000
Bra028593 Brassica rapa Bra028593 I 0.000
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I 0.000
Cagra.0917s0061 Capsella grandiflora Cagra.0917s0061 I 0.000
Carubv10003148m.g Capsella rubella Carubv10003148m.g I 0.000
Carubv10026822m.g Capsella rubella Carubv10026822m.g I 0.000
Ciclev10020765m.g Citrus clementina Ciclev10020765m.g I 0.000
orange1.1g039198m.g Citrus sinensis orange1.1g039198m.g I 0.000
Cucsa.338590 Cucumis sativus Cucsa.338590 I 0.000
Eucgr.F00325 Eucalyptus grandis Eucgr.F00325 I 0.000
Eucgr.K00077 Eucalyptus grandis Eucgr.K00077 I 0.000
Thhalv10004620m.g Eutrema salsugineum Thhalv10004620m.g I 0.000
Thhalv10014028m.g Eutrema salsugineum Thhalv10014028m.g I 0.000
gene12564-v1.0-hybrid Fragaria vesca gene12564-v1.0-hybrid I 0.000
gene02214-v1.0-hybrid Fragaria vesca gene02214-v1.0-hybrid I 0.000
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.000
Gorai.008G179600 Gossypium raimondii Gorai.008G179600 I 0.000
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.000
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I 0.000
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.000
MLOC_51960 Hordeum vulgare MLOC_51960 I 0.000
LPERR03G17070 Leersia perrieri LPERR03G17070 I 0.000
MDP0000286526 Malus domestica MDP0000286526 I 0.000
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.000
cassava4659.m1 Manihot esculenta cassava4659.m1 I 0.000
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.000
cassava44907.m1 Manihot esculenta cassava44907.m1 I 0.000
GSMUA_Achr3G06470_001 Musa acuminata GSMUA_Achr3G06470_001 I 0.000
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.000
OBART02G32900 Oryza barthii OBART02G32900 I 0.000
OB03G29100 Oryza brachyantha OB03G29100 I 0.000
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.000
ORGLA03G0186000 Oryza glaberrima ORGLA03G0186000 I 0.000
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.000
BGIOSGA010612 Oryza indica BGIOSGA010612 I 0.000
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.000
OMERI03G17860 Oryza meridionalis OMERI03G17860 I 0.000
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.000
ONIVA03G21580 Oryza nivara ONIVA03G21580 I 0.000
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.000
OPUNC03G18740 Oryza punctata OPUNC03G18740 I 0.000
OPUNC06G07380 Oryza punctata OPUNC06G07380 I 0.000
ORUFI03G20530 Oryza rufipogon ORUFI03G20530 I 0.000
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.000
OS03G0388600 Oryza sativa OS03G0388600 I 0.000
Pavir.Da02398 Panicum virgatum Pavir.Da02398 I 0.000
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I 0.000
POPTR_0019s07760 Populus trichocarpa POPTR_0019s07760 I 0.000
Pm019588 Prunus mume Pm019588 I 0.000
Pm023191 Prunus mume Pm023191 I 0.000
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.000
PRUPE_ppa019280mg Prunus persica PRUPE_ppa019280mg I 0.000
Si017785m.g Setaria italica Si017785m.g I 0.000
Si014103m.g Setaria italica Si014103m.g I 0.000
Sb07g028990 Sorghum bicolor Sb07g028990 I 0.000
TCM_034902 Theobroma cacao TCM_034902 I 0.000
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.000
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.000
Traes_7AS_B8E8A2F55 Triticum aestivum Traes_7AS_B8E8A2F55 I 0.000
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.000
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I 0.000
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.000
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.000
TRIUR3_23397 Triticum urartu TRIUR3_23397 I 0.000
TRIUR3_03304 Triticum urartu TRIUR3_03304 I 0.000
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.000
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.000
GRMZM2G017268 Zea mays GRMZM2G017268 I 0.000
GRMZM2G110135 Zea mays GRMZM2G110135 I 0.000