clockb (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000003631 T033619_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN

NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.882 0.902
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH

DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.882 0.902
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN

NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.882 0.902
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.882 0.902
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.882 0.902
Clock
M09473_2.00
Mus musculus
CACGTGNN

NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.882 0.902
CLOCK
M09849_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.882 0.902
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH

DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.882 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000014344 bHLH 25 75
ENSDARP00000120780 bHLH 25 75

Links

Other bHLH family TFs
Other Danio rerio TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CADAFLAG00008154 Aspergillus flavus CADAFLAG00008154 N 0.000
ATEG_08855 Aspergillus terreus CADATEAG00007897 N 0.000
Pc15g01120 Penicillium chrysogenum Pc15g01120 N 0.000
PCH_Pc15g01120 Penicillium rubens PCH_Pc15g01120 N 0.000
U727_00433680161 Penicillium solitum U727_00433680161 N 0.000