CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tcf3a
(
Danio rerio
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSDARG00000005915
T033623_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables sequence-specific DNA binding activity. Acts upstream of or within striated muscle cell development. Predicted to be part of transcription regulator complex. Is expressed in heart. Human ortholog(s) of this gene implicated in agammaglobulinemia and colorectal cancer. Orthologous to human TCF3 (transcription factor 3). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Tcf3
M09465_2.00
Mus musculus
ABWTCAAAGS
SCTTTGAWVT
Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724
0.914
0.923
Tcf3
M09466_2.00
Mus musculus
VCAGCTGBNN
NNVCAGCTGB
Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978
0.914
0.923
Tcf3
M09886_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E47_05
0.914
0.923
Tcf12
M01740_2.00
Mus musculus
NVCAYCTGB
VCAGRTGBN
PBM
Weirauch et al.(2014)
pTH5071
0.886
0.923
TCF3
M02775_2.00
Homo sapiens
NVCACCTGBN
NVCAGGTGBN
SELEX
Jolma et al.(2013)
TCF3_1
0.886
0.923
TCF12
M04137_2.00
Homo sapiens
VCACSTGB
VCASGTGB
SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX
0.886
0.923
Tcf12
M08062_2.00
Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0521.1
0.886
0.923
TCF12
M07805_2.00
Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN
ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha
0.886
0.923
TCF12
M07806_2.00
Homo sapiens
VCASCTGB
VCAGSTGB
ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha
0.886
0.923
TCF12
M08731_2.00
Homo sapiens
CMCASCTGSH
DSCAGSTGKG
Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A
0.886
0.923
TCF3
M08710_2.00
Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB
Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A
0.886
0.923
Tcf12
M08762_2.00
Mus musculus
VMCASCTGSH
DSCAGSTGKB
Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A
0.886
0.923
TCF12
M09458_2.00
Homo sapiens
NNVCAGCTGB
VCAGCTGBNN
Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465
0.886
0.923
TCF3
M09791_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E12_Q6
0.886
0.923
TCF3
M09792_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_01
0.886
0.923
TCF3
M09793_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$E2A_Q6_02
0.886
0.923
TCF3
M09794_2.00
Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB
Transfac
Matys et al.(2006)
V$E47_01
0.886
0.923
TCF3
M09795_2.00
Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN
Transfac
Matys et al.(2006)
V$E47_02
0.886
0.923
TCF12
M09858_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEB_Q6
0.886
0.923
TCF12
M09859_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HTF4_Q2
0.886
0.923
TCF12
M09860_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_01
0.886
0.923
TCF12
M09861_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_03
0.886
0.923
TCF12
M09862_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TCF12_05
0.886
0.923
TCF12
M04138_2.00
Homo sapiens
NCAYCTGN
NCAGRTGN
SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX
0.886
0.923
Tcf3
M00753_2.00
Mus musculus
VCACCTGBN
NVCAGGTGB
PBM
Weirauch et al.(2013)
pTH3866
0.886
0.846
Tcf3
M01723_2.00
Mus musculus
NNVCACSTGB
VCASGTGBNN
PBM
Weirauch et al.(2014)
pTH4580
0.886
0.846
Tcf3
M00118_2.00
Mus musculus
VCAYCTGB
VCAGRTGB
PBM
Badis et al.(2009)
Tcfe2a_3865
0.886
0.846
Tcf4
M01750_2.00
Mus musculus
VCAGVTGBN
NVCABCTGB
PBM
Weirauch et al.(2014)
pTH5101
0.884
0.885
TCF4
M02807_2.00
Homo sapiens
HRCACCTGBN
NVCAGGTGYD
SELEX
Jolma et al.(2013)
TCF4_1
0.884
0.885
TCF4
M02808_2.00
Homo sapiens
NVCACCTBBN
NVVAGGTGBN
SELEX
Jolma et al.(2013)
TCF4_2
0.884
0.885
TCF4
M02728_2.00
Homo sapiens
RCACCTG
CAGGTGY
SELEX
Jolma et al.(2010)
TCF4_dimer
0.884
0.885
TCF4
M04214_2.00
Homo sapiens
VCACCTGB
VCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX
0.884
0.885
Tcf4
M08775_2.00
Mus musculus
HRCACCTGB
VCAGGTGYD
Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B
0.884
0.885
TCF4
M09461_2.00
Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST
Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054
0.884
0.885
TCF4
M04215_2.00
Homo sapiens
VCACCTGN
NCAGGTGB
SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX
0.884
0.885
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000010044
bHLH
490
543
RRMANNARERLRVRDINEAFKELGRMCQLHLSNEKPQTKLLILHQAVNVILNLE
Links
Other
bHLH
family TFs
Other
Danio rerio
TFs
204 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy