nhlh2 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000025495 T033664_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH

DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.911 0.923
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH

DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.911 0.923
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH

DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.911 0.923
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC

GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.911 0.923
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM

KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.911 0.923
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC

GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.911 0.923
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY

RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.911 0.923
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN

NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.894 0.981
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH

DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.894 0.981
NHLH2
M09878_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.894 0.981
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.894 0.981
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB

VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.894 0.962
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK

MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.894 0.962
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.894 0.962
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.894 0.962
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY

RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.894 0.962
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN

NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.894 0.962
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN

NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.894 0.962
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH

DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.894 0.962
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.894 0.962
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000015418 bHLH 65 117

Links

Other bHLH family TFs
Other Danio rerio TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Cmyd_10005399 Chelonia mydas Cmyd_10005399 N 0.000
ENSAMEG00000002425 Ailuropoda melanoleuca ENSAMEG00000002425 N 0.000
ENSBTAP00000025295-D1 Bos grunniens ENSBTAP00000025295-D1 N 0.000
ENSCSAG00000002202 Chlorocebus sabaeus ENSCSAG00000002202 N 0.000
ENSFALG00000004873 Ficedula albicollis ENSFALG00000004873 N 0.000
ENSGALG00000001278 Gallus gallus ENSGALG00000001278 N 0.000
ENSMPUG00000008711 Mustela putorius furo ENSMPUG00000008711 N 0.000
ENSNLEG00000007488 Nomascus leucogenys ENSNLEG00000007488 N 0.000
ENSOARG00000014507 Ovis aries ENSOARG00000014507 N 0.000
ENSPANG00000017470 Papio anubis ENSPANG00000017470 N 0.000
ENSPPYG00000004061 Pongo abelii ENSPPYG00000004061 N 0.000
ENSPTRG00000004477 Pan troglodytes ENSPTRG00000004477 N 0.000
ENSSHAG00000004503 Sarcophilus harrisii ENSSHAG00000004503 N 0.000
ENSTSYG00000000544 Tarsius syrichta ENSTSYG00000000544 N 0.000
Ogr16136 Ophisaurus gracilis Ogr16136 N 0.000
PRDM10 Canis familiaris ENSCAFG00000010164 N 0.000
PRDM10 Pteropus vampyrus ENSPVAG00000012764 N 0.000
Prdm10 Rattus norvegicus ENSRNOG00000007853 N 0.000
PRDM10 Bos taurus ENSBTAG00000019001 N 0.000
PRDM10 Tursiops truncatus ENSTTRG00000009189 N 0.000
PRDM10 Sus scrofa ENSSSCG00000015243 N 0.000
PRDM10 Felis catus ENSFCAG00000004111 N 0.000
PRDM10 Otolemur garnettii ENSOGAG00000010723 N 0.000
PRDM10 Homo sapiens ENSG00000170325 N 0.000
PRDM10 Equus caballus ENSECAG00000011499 N 0.000
PRDM10 Gorilla gorilla ENSGGOG00000015359 N 0.000
PRDM10 Meleagris gallopavo ENSMGAG00000001112 N 0.000
PRDM10 Myotis lucifugus ENSMLUG00000013051 N 0.000
PRDM10 Macaca mulatta ENSMMUG00000017555 N 0.000
PRDM10 Monodelphis domestica ENSMODG00000004979 N 0.000
PRDM10 Callithrix jacchus ENSCJAG00000009235 N 0.000
PRDM10 Choloepus hoffmanni ENSCHOG00000002494 N 0.000
prdm10 Xenopus tropicalis XB-GENE-985864 N 0.000
Pvit_19202 Pogona vitticeps Pvit_19202 N 0.000