myod1 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000030110 T033667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Myf5
M09463_2.00
Mus musculus
NRRCAGCTGY

RCAGCTGYYN
Misc
Heinz et al.(2010)
GM-Myf5_GSE24852
0.870 0.923
MYF5
M09821_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYF5_Q6
0.870 0.923
MYOD1
M04116_2.00
Homo sapiens
BAACASSTGNYV

BRNCASSTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_1
0.864 0.923
MYOD1
M04117_2.00
Homo sapiens
BRVCASMTGDCG

CGHCAKSTGBYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_2
0.864 0.923
MYOD1
M04120_2.00
Homo sapiens
NAACASSTGNYV

BRNCASSTGTTN
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_1
0.864 0.923
MYOD1
M04121_2.00
Homo sapiens
BRMCASCTGDCR

YGHCAGSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_2
0.864 0.923
Myod1
M08060_2.00
Mus musculus
NVNRRCAGSTGBN

NVCASCTGYYNBN
ChIP-seq
Mathelier et al.(2014)
MA0499.1
0.864 0.923
MYOD1
M08724_2.00
Homo sapiens
NVNNRNRRCAGCTGN

NCAGCTGYYNYNNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_HUMAN.H11MO.0.A
0.864 0.923
Myod1
M08745_2.00
Mus musculus
NVNRRNRRCAGSTGB

VCASCTGYYNYYNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_MOUSE.H11MO.0.A
0.864 0.923
MYOD1
M09838_2.00
Homo sapiens
HRVCACCTGHBB

VVDCAGGTGBYD
Transfac
Matys et al.(2006)
V$MYOD_01
0.864 0.923
MYOD1
M09839_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOD_Q6_02
0.864 0.923
MYOD1
M09840_2.00
Homo sapiens
NVCABCTGNY

RNCAGVTGBN
Transfac
Matys et al.(2006)
V$MYOD_Q6
0.864 0.923
MYOD1
M04118_2.00
Homo sapiens
BAACANVTGTYV

BRACABNTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_1
0.864 0.923
MYOD1
M04119_2.00
Homo sapiens
BRRCASSTGDCR

YGHCASSTGYYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_2
0.864 0.923
MYOD1
M04122_2.00
Homo sapiens
NAMCASSTGBYV

BRVCASSTGKTN
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_1
0.864 0.923
MYOD1
M04123_2.00
Homo sapiens
BRMCASVTGNCR

YGNCABSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_2
0.864 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000009713 bHLH 85 136

Links

Other bHLH family TFs
Other Danio rerio TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK04914.1 Cannabis sativa PK04914.1 D 0.000
AT3G10030 Arabidopsis thaliana AT3G10030 D 0.000
Aquca_019_00072 Aquilegia coerulea Aquca_019_00072 I 0.000
Aquca_009_01006 Aquilegia coerulea Aquca_009_01006 I 0.000
mgf008067m Mimulus guttatus mgf008067m I 0.000
Cucsa.378670 Cucumis sativus Cucsa.378670 I 0.000
cassava30771.valid.m1 Manihot esculenta cassava30771.valid.m1 I 0.000
29815.m000504 Ricinus communis 29815.m000504 I 0.000
28077.m000081 Ricinus communis 28077.m000081 I 0.000
Pm026265 Prunus mume Pm026265 I 0.000
Cla018015 Citrullus lanatus Cla018015 I 0.000
Ca_20148 Cicer arietinum Ca_20148 I 0.000
VIT_13s0074g00240 Vitis vinifera VIT_13s0074g00240 I 0.000
VIT_08s0007g04160 Vitis vinifera VIT_08s0007g04160 I 0.000
TRIUR3_22240 Triticum urartu TRIUR3_22240 I 0.000
Traes_2BL_83EDE2CBB Triticum aestivum Traes_2BL_83EDE2CBB I 0.000
Bostr.22252s0062 Boechera stricta Bostr.22252s0062 I 0.000
Cagra.4686s0014 Capsella grandiflora Cagra.4686s0014 I 0.000
Carubv10015256m.g Capsella rubella Carubv10015256m.g I 0.000
Thhalv10020471m.g Eutrema salsugineum Thhalv10020471m.g I 0.000
SapurV1A.0439s0120 Salix purpurea SapurV1A.0439s0120 I 0.000
SapurV1A.0243s0300 Salix purpurea SapurV1A.0243s0300 I 0.000
SapurV1A.0226s0070 Salix purpurea SapurV1A.0226s0070 I 0.000
Pavir.J13370 Panicum virgatum Pavir.J13370 I 0.000
Pavir.Gb01778 Panicum virgatum Pavir.Gb01778 I 0.000
MDP0000415733 Malus domestica MDP0000415733 I 0.000
MDP0000399495 Malus domestica MDP0000399495 I 0.000
MDP0000201016 Malus domestica MDP0000201016 I 0.000
Gorai.007G371500 Gossypium raimondii Gorai.007G371500 I 0.000
gene30101-v1.0-hybrid Fragaria vesca gene30101-v1.0-hybrid I 0.000
evm.TU.supercontig_128.55 Carica papaya evm.TU.supercontig_128.55 I 0.000
Eucgr.A01571 Eucalyptus grandis Eucgr.A01571 I 0.000
Ciclev10011433m.g Citrus clementina Ciclev10011433m.g I 0.000
Traes_2AL_246006E77 Triticum aestivum Traes_2AL_246006E77 I 0.000
TCM_043551 Theobroma cacao TCM_043551 I 0.000
MLOC_28975 Hordeum vulgare MLOC_28975 I 0.000
LPERR04G08300 Leersia perrieri LPERR04G08300 I 0.000
GSMUA_Achr6G13420_001 Musa acuminata GSMUA_Achr6G13420_001 I 0.000
GSMUA_Achr2G20220_001 Musa acuminata GSMUA_Achr2G20220_001 I 0.000
GRMZM2G002978 Zea mays GRMZM2G002978 I 0.000
GLYMA13G21371 Glycine max GLYMA13G21371 I 0.000
GLYMA10G34520 Glycine max GLYMA10G34520 I 0.000
GLYMA10G07490 Glycine max GLYMA10G07490 I 0.000
fgenesh1_pm.C_scaffold_3000820 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000820 I 0.000
F775_31501 Aegilops tauschii F775_31501 I 0.000
BRADI5G08980 Brachypodium distachyon BRADI5G08980 I 0.000
Bra029812 Brassica rapa Bra029812 I 0.000
Bo5g137800 Brassica oleracea Bo5g137800 I 0.000
BGIOSGA016339 Oryza indica BGIOSGA016339 I 0.000
MTR_1g061600 Medicago truncatula MTR_1g061600 I 0.000
OB04G18670 Oryza brachyantha OB04G18670 I 0.000
OGLUM04G11230 Oryza glumaepatula OGLUM04G11230 I 0.000
TCM_022397 Theobroma cacao TCM_022397 I 0.000
Solyc09g008850.2 Solanum lycopersicum Solyc09g008850.2 I 0.000
Si009787m.g Setaria italica Si009787m.g I 0.000
SELMODRAFT_134056 Selaginella moellendorffii SELMODRAFT_134056 I 0.000
SELMODRAFT_130409 Selaginella moellendorffii SELMODRAFT_130409 I 0.000
Sb06g015280 Sorghum bicolor Sb06g015280 I 0.000
PRUPE_ppa022998mg Prunus persica PRUPE_ppa022998mg I 0.000
PRUPE_ppa004154mg Prunus persica PRUPE_ppa004154mg I 0.000
POPTR_0010s23970 Populus trichocarpa POPTR_0010s23970 I 0.000
POPTR_0008s02730 Populus trichocarpa POPTR_0008s02730 I 0.000
PGSC0003DMG400002727 Solanum tuberosum PGSC0003DMG400002727 I 0.000
OPUNC04G09570 Oryza punctata OPUNC04G09570 I 0.000
ONIVA04G09510 Oryza nivara ONIVA04G09510 I 0.000
OMERI04G10080 Oryza meridionalis OMERI04G10080 I 0.000
AMTR_s00006p00265300 Amborella trichopoda AMTR_s00006p00265300 I 0.000