myod1 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000030110 T033667_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Myf5
M09463_2.00
Mus musculus
NRRCAGCTGY

RCAGCTGYYN
Misc
Heinz et al.(2010)
GM-Myf5_GSE24852
0.870 0.923
MYF5
M09821_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYF5_Q6
0.870 0.923
MYOD1
M04116_2.00
Homo sapiens
BAACASSTGNYV

BRNCASSTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_1
0.864 0.923
MYOD1
M04117_2.00
Homo sapiens
BRVCASMTGDCG

CGHCAKSTGBYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_2
0.864 0.923
MYOD1
M04120_2.00
Homo sapiens
NAACASSTGNYV

BRNCASSTGTTN
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_1
0.864 0.923
MYOD1
M04121_2.00
Homo sapiens
BRMCASCTGDCR

YGHCAGSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_2
0.864 0.923
Myod1
M08060_2.00
Mus musculus
NVNRRCAGSTGBN

NVCASCTGYYNBN
ChIP-seq
Mathelier et al.(2014)
MA0499.1
0.864 0.923
MYOD1
M08724_2.00
Homo sapiens
NVNNRNRRCAGCTGN

NCAGCTGYYNYNNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_HUMAN.H11MO.0.A
0.864 0.923
Myod1
M08745_2.00
Mus musculus
NVNRRNRRCAGSTGB

VCASCTGYYNYYNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_MOUSE.H11MO.0.A
0.864 0.923
MYOD1
M09838_2.00
Homo sapiens
HRVCACCTGHBB

VVDCAGGTGBYD
Transfac
Matys et al.(2006)
V$MYOD_01
0.864 0.923
MYOD1
M09839_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOD_Q6_02
0.864 0.923
MYOD1
M09840_2.00
Homo sapiens
NVCABCTGNY

RNCAGVTGBN
Transfac
Matys et al.(2006)
V$MYOD_Q6
0.864 0.923
MYOD1
M04118_2.00
Homo sapiens
BAACANVTGTYV

BRACABNTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_1
0.864 0.923
MYOD1
M04119_2.00
Homo sapiens
BRRCASSTGDCR

YGHCASSTGYYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_2
0.864 0.923
MYOD1
M04122_2.00
Homo sapiens
NAMCASSTGBYV

BRVCASSTGKTN
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_1
0.864 0.923
MYOD1
M04123_2.00
Homo sapiens
BRMCASVTGNCR

YGNCABSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_2
0.864 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000009713 bHLH 85 136

Links

Other bHLH family TFs
Other Danio rerio TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL014322 Aedes aegypti AAEL014322 I 0.870
ENSAMEG00000013193 Ailuropoda melanoleuca ENSAMEG00000013193 I 0.870
ENSAMEG00000018197 Ailuropoda melanoleuca ENSAMEG00000018197 I 0.864
Alligator_sinensis_CCG017419.1 Alligator sinensis Alligator_sinensis_CCG017419.1 I 0.840
Alligator_sinensis_CCG013129.1 Alligator sinensis Alligator_sinensis_CCG013129.1 I 0.894
ENSAPLG00000001124 Anas platyrhynchos ENSAPLG00000001124 I 0.840
ENSAPLG00000005673 Anas platyrhynchos ENSAPLG00000005673 I 0.894
MYOD1 Anolis carolinensis ENSACAG00000000054 I 0.864
AALB008334 Anopheles albimanus AALB008334 I 0.870
AARA002094 Anopheles arabiensis AARA002094 I 0.870
AATE018889 Anopheles atroparvus AATE018889 I 0.870
ACHR010174 Anopheles christyi ACHR010174 I 0.870
ACOM034431 Anopheles coluzzii ACOM034431 I 0.870
ACUA006973 Anopheles culicifacies ACUA006973 I 0.870
ADAC002492 Anopheles darlingi ADAC002492 I 0.870
ADIR010448 Anopheles dirus ADIR010448 I 0.870
AEPI006062 Anopheles epiroticus AEPI006062 I 0.870
AFAF001067 Anopheles farauti AFAF001067 I 0.870
AFUN011634 Anopheles funestus AFUN011634 I 0.870
AMAM006832 Anopheles maculatus AMAM006832 I 0.870
AMEM001613 Anopheles merus AMEM001613 I 0.870
AMIN003460 Anopheles minimus AMIN003460 I 0.870
AQUA000514 Anopheles quadriannulatus AQUA000514 I 0.870
ASTEI05690 Anopheles stephensi ASTEI05690 I 0.870
Afo_R014556 Aptenodytes forsteri Afo_R014556 I 0.894
ENSAMXG00000000428 Astyanax mexicanus ENSAMXG00000000428 I 0.840
ENSAMXG00000017040 Astyanax mexicanus ENSAMXG00000017040 I 0.884
ENSBTAP00000002868-D1 Bos grunniens ENSBTAP00000002868-D1 I 0.864
MYF5 Bos taurus ENSBTAG00000026972 I 0.870
MYOD1 Bos taurus ENSBTAG00000002216 I 0.864
fgenesh2_pg.scaffold_226000031 Branchiostoma floridae fgenesh2_pg.scaffold_226000031 I 0.846
fgenesh2_pg.scaffold_226000032 Branchiostoma floridae fgenesh2_pg.scaffold_226000032 I 0.846
fgenesh2_pg.scaffold_29000123 Branchiostoma floridae fgenesh2_pg.scaffold_29000123 I 0.846
Brh_R006718 Buceros rhinoceros Brh_R006718 I 0.894
Brh_R000054 Buceros rhinoceros Brh_R000054 I 0.840
MYOD1 Callithrix jacchus ENSCJAG00000009258 I 0.864
MYF5 Callithrix jacchus ENSCJAG00000019340 I 0.870
Aan_R006542 Calypte anna Aan_R006542 I 0.894
MYF5 Canis familiaris ENSCAFG00000005808 I 0.870
MYOD1 Canis familiaris ENSCAFG00000009066 I 0.864
MYOD1 Cavia porcellus ENSCPOG00000021351 I 0.864
MYF5 Cavia porcellus ENSCPOG00000007766 I 0.870
ENSCSAG00000004934 Chlorocebus sabaeus ENSCSAG00000004934 I 0.864
ENSCSAG00000003889 Chlorocebus sabaeus ENSCSAG00000003889 I 0.870
MYF5 Choloepus hoffmanni ENSCHOG00000008319 I 0.870
CpipJ_CPIJ005345 Culex pipiens CpipJ_CPIJ005345 I 0.870
CPIJ005345 Culex quinquefasciatus CPIJ005345 I 0.870
myf5 Danio rerio ENSDARG00000007277 I 0.840
MYF5 Dasypus novemcinctus ENSDNOG00000034747 I 0.870
MYOD1 Dasypus novemcinctus ENSDNOG00000017164 I 0.864
Myf5 Dipodomys ordii ENSDORG00000015437 I 0.870
MYOD1 Echinops telfairi ENSETEG00000003979 I 0.864
MYF5 Echinops telfairi ENSETEG00000011255 I 0.870
MYOD1 Equus caballus ENSECAG00000002132 I 0.864
MYF5 Equus caballus ENSECAG00000020047 I 0.870
MYF5 Erinaceus europaeus ENSEEUG00000011612 I 0.870
MYOD1 Felis catus ENSFCAG00000004973 I 0.864
MYF5 Felis catus ENSFCAG00000015011 I 0.870
ENSFALG00000010507 Ficedula albicollis ENSFALG00000010507 I 0.840
ENSFALG00000000758 Ficedula albicollis ENSFALG00000000758 I 0.894
ENSGMOG00000016963 Gadus morhua ENSGMOG00000016963 I 0.860
ENSGMOG00000011389 Gadus morhua ENSGMOG00000011389 I 0.914
MYOD1 Gallus gallus ENSGALG00000006216 I 0.894
MYF5 Gallus gallus ENSGALG00000028091 I 0.840
myod1 Gasterosteus aculeatus ENSGACG00000008444 I 0.884
myod1 Gasterosteus aculeatus ENSGACG00000017350 I 0.860
Gfo_R009107 Geospiza fortis Gfo_R009107 I 0.894
MYF5 Gorilla gorilla ENSGGOG00000004366 I 0.870
MYOD1 Gorilla gorilla ENSGGOG00000008222 I 0.864
MYOD1 Homo sapiens ENSG00000129152 D 0.864
MYF5 Homo sapiens ENSG00000111049 D 0.870
ENSSTOG00000015810 Ictidomys tridecemlineatus ENSSTOG00000015810 I 0.870
ENSSTOG00000011556 Ictidomys tridecemlineatus ENSSTOG00000011556 I 0.864
ENSLACG00000014430 Latimeria chalumnae ENSLACG00000014430 I 0.894
ENSLOCG00000002164 Lepisosteus oculatus ENSLOCG00000002164 I 0.894
MYF5 Loxodonta africana ENSLAFG00000016473 I 0.870
MYOD1 Loxodonta africana ENSLAFG00000018353 I 0.864
LLOJ004446 Lutzomyia longipalpis LLOJ004446 I 0.846
ENSP00000228644 Macaca fascicularis ENSP00000228644 I 0.870
MYF5 Macaca mulatta ENSMMUG00000011669 I 0.870
MYOD1 Macaca mulatta ENSMMUG00000006400 I 0.864
ENSMEUG00000010628 Macropus eugenii ENSMEUG00000010628 I 0.840
ENSMEUG00000014270 Macropus eugenii ENSMEUG00000014270 I 0.864
ENSMGAG00000011091 Meleagris gallopavo ENSMGAG00000011091 I 0.840
ENSMGAG00000007210 Meleagris gallopavo ENSMGAG00000007210 I 0.894
ENSMICG00000011211 Microcebus murinus ENSMICG00000011211 I 0.870
MYOD1 Microcebus murinus ENSMICG00000005566 I 0.864
MYOD1 Monodelphis domestica ENSMODG00000006749 I 0.864
MYF5 Monodelphis domestica ENSMODG00000020478 I 0.840
ENSMPUG00000004935 Mustela putorius furo ENSMPUG00000004935 I 0.870
ENSMPUG00000013563 Mustela putorius furo ENSMPUG00000013563 I 0.864
Myf5 Mus musculus ENSMUSG00000000435 D 0.870
Myod1 Mus musculus ENSMUSG00000009471 D 0.864
Myotis_brandtii_MYF5_10034131 Myotis brandtii Myotis_brandtii_MYF5_10034131 I 0.870
MYF5 Myotis lucifugus ENSMLUG00000004943 I 0.870
MYOD1 Myotis lucifugus ENSMLUG00000007940 I 0.864
ENSNLEG00000005207 Nomascus leucogenys ENSNLEG00000005207 I 0.870
MYF5 Ochotona princeps ENSOPRG00000009007 I 0.870
MYOD1 Ochotona princeps ENSOPRG00000002390 I 0.864
Ogr16343 Ophisaurus gracilis Ogr16343 I 0.894
ENSONIG00000000077 Oreochromis niloticus ENSONIG00000000077 I 0.840
ENSONIG00000007897 Oreochromis niloticus ENSONIG00000007897 I 0.884
ENSONIG00000010796 Oreochromis niloticus ENSONIG00000010796 I 0.884
MYF5 Ornithorhynchus anatinus ENSOANG00000004853 I 0.840
MYF5 Oryctolagus cuniculus ENSOCUG00000025477 I 0.870
myf5 Oryzias latipes ENSORLG00000016257 I 0.840
myod1 Oryzias latipes ENSORLG00000000694 I 0.884
MYF5 Otolemur garnettii ENSOGAG00000001039 I 0.840
MYOD1 Otolemur garnettii ENSOGAG00000029784 I 0.864
ENSOARG00000015159 Ovis aries ENSOARG00000015159 I 0.870
ENSOARG00000025174 Ovis aries ENSOARG00000025174 I 0.864
MYOD1 Pan troglodytes ENSPTRG00000003406 I 0.864
MYF5 Pan troglodytes ENSPTRG00000005261 I 0.870
ENSPANG00000011946 Papio anubis ENSPANG00000011946 I 0.864
ENSPANG00000020394 Papio anubis ENSPANG00000020394 I 0.870
ENSPSIG00000012000 Pelodiscus sinensis ENSPSIG00000012000 I 0.840
ENSPFOG00000017488 Poecilia formosa ENSPFOG00000017488 I 0.840
ENSPFOG00000009843 Poecilia formosa ENSPFOG00000009843 I 0.884
ENSPFOG00000013532 Poecilia formosa ENSPFOG00000013532 I 0.884
Pvit_01710 Pogona vitticeps Pvit_01710 I 0.894
ENSPPYG00000003449 Pongo abelii ENSPPYG00000003449 I 0.864
ENSPPYG00000004800 Pongo abelii ENSPPYG00000004800 I 0.870
MYF5 Procavia capensis ENSPCAG00000001722 I 0.870
MYOD1 Procavia capensis ENSPCAG00000001317 I 0.864
MYOD1 Pteropus vampyrus ENSPVAG00000012829 I 0.864
MYF5 Pteropus vampyrus ENSPVAG00000003336 I 0.870
Myf5 Rattus norvegicus ENSRNOG00000004768 I 0.870
Myod1 Rattus norvegicus ENSRNOG00000011306 I 0.864
ENSSHAG00000013391 Sarcophilus harrisii ENSSHAG00000013391 I 0.840
ENSSHAG00000017220 Sarcophilus harrisii ENSSHAG00000017220 I 0.864
ENSSARG00000002401 Sorex araneus ENSSARG00000002401 I 0.864
MYF5 Sorex araneus ENSSARG00000008217 I 0.870
MYF5 Sus scrofa ENSSSCG00000000937 I 0.870
MYOD1 Sus scrofa ENSSSCG00000013375 I 0.864
MYOD1 Taeniopygia guttata ENSTGUG00000008814 I 0.894
ENSTGUG00000007755 Taeniopygia guttata ENSTGUG00000007755 I 0.840
myod2 Takifugu rubripes ENSTRUG00000014891 I 0.872
myod1 Takifugu rubripes ENSTRUG00000016609 I 0.894
ENSTSYG00000003282 Tarsius syrichta ENSTSYG00000003282 I 0.870
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I 0.864
myod1 Tetraodon nigroviridis ENSTNIG00000018793 I 0.872
MYOD1 Tupaia belangeri ENSTBEG00000003438 I 0.864
MYF5 Tupaia belangeri ENSTBEG00000008363 I 0.870
MYOD1 Tursiops truncatus ENSTTRG00000013869 I 0.864
MYF5 Tursiops truncatus ENSTTRG00000014691 I 0.870
MYF5 Vicugna pacos ENSVPAG00000001927 I 0.870
myod1.S Xenopus laevis XB-GENE-1017506 I 0.894
myf5.L Xenopus laevis XB-GENE-866267 I 0.870
myod1.L Xenopus laevis XB-GENE-6252600 I 0.888
AAL11024 Xenopus tropicalis AAL11024 I 0.870
myod1 Xenopus tropicalis XB-GENE-1017498 I 0.894
myf5 Xenopus tropicalis XB-GENE-493550 I 0.870
ENSXMAG00000007430 Xiphophorus maculatus ENSXMAG00000007430 I 0.884
ENSXMAG00000017496 Xiphophorus maculatus ENSXMAG00000017496 I 0.840
ENSXMAG00000009780 Xiphophorus maculatus ENSXMAG00000009780 I 0.884