CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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arntl2
(
Danio rerio
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSDARG00000041381
T033687_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian rhythm and photoperiodism. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human ARNTL2 (aryl hydrocarbon receptor nuclear translocator like 2). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Arntl
M01751_2.00
Mus musculus
NCACGTGAYN
NRTCACGTGN
PBM
Weirauch et al.(2014)
pTH5064
0.839
0.796
ARNTL
M02787_2.00
Homo sapiens
GTCACGTGAC
GTCACGTGAC
SELEX
Jolma et al.(2013)
ARNTL_1
0.839
0.796
ARNTL
M04124_2.00
Homo sapiens
RDCACGTGHN
NDCACGTGHY
SELEX
Yin et al.(2017)
ARNTL_eDBD_HT-SELEX
0.839
0.796
ARNTL
M08725_2.00
Homo sapiens
NVDCACGTGBN
NVCACGTGHBN
Misc
Kulakovskiy et al.(2013)
BMAL1_HUMAN.H11MO.0.A
0.839
0.796
Arntl
M08776_2.00
Mus musculus
VCACGTGMN
NKCACGTGB
Misc
Kulakovskiy et al.(2013)
BMAL1_MOUSE.H11MO.0.A
0.839
0.796
Arntl
M09478_2.00
Mus musculus
CACGTGNN
NNCACGTG
Misc
Heinz et al.(2010)
Liver-Bmal1_GSE39860
0.839
0.796
Arntl
M09889_2.00
Rattus norvegicus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BMAL1_01
0.839
0.796
ARNTL
M09841_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$BMAL1_Q6
0.839
0.796
ARNTL
M04125_2.00
Homo sapiens
NDCACRTGHY
RDCAYGTGHN
SELEX
Yin et al.(2017)
ARNTL_eDBD_Methyl-HT-SELEX
0.839
0.796
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000134619
bHLH
90
143
IREPHSQIEKRRRDKMNNLIDELAAMIPTCNPMSRKLDKLTVLRMAVQHLKSLK
ENSDARP00000139384
bHLH
90
143
IREPHSQIEKRRRDKMNNLIDELAAMIPTCNPMSRKLDKLTVLRMAVQHLKSLK
Links
Other
bHLH
family TFs
Other
Danio rerio
TFs
114 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy