usf1 (Danio rerio)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDARG00000041689 T033688_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Human ortholog(s) of this gene implicated in cardiovascular system disease and type 2 diabetes mellitus. Orthologous to human USF1 (upstream transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000002107 bHLH 199 254
ENSDARP00000114463 bHLH 197 224
ENSDARP00000116327 bHLH 199 236
ENSDARP00000117904 bHLH 186 213
ENSDARP00000118512 bHLH 189 227
ENSDARP00000119234 bHLH 178 205
ENSDARP00000122834 bHLH 120 175
ENSDARP00000123553 bHLH 187 242
ENSDARP00000139344 bHLH 199 256

Links

Other bHLH family TFs
Other Danio rerio TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000010483 Astyanax mexicanus ENSAMXG00000010483 N 0.889
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.889
ENSAMXG00000012300 Astyanax mexicanus ENSAMXG00000012300 N 0.889
ARNTL Homo sapiens ENSG00000133794 D 0.887
USF2 Homo sapiens ENSG00000105698 D 0.884
ENSXMAG00000006484 Xiphophorus maculatus ENSXMAG00000006484 I 0.876
ENSPFOG00000005160 Poecilia formosa ENSPFOG00000005160 I 0.876
ENSGMOG00000009783 Gadus morhua ENSGMOG00000009783 I 0.876
usf1 Gasterosteus aculeatus ENSGACG00000005115 I 0.871
usf1 Takifugu rubripes ENSTRUG00000005343 I 0.871
usf1 Oryzias latipes ENSORLG00000015402 I 0.871
usf1 Tetraodon nigroviridis ENSTNIG00000014361 I 0.871
augustus_masked-nMf.1.1.scaf28485-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf28485-processed-gene-0.0 N 0.863
USF2 Gasterosteus aculeatus ENSGACG00000012475 I 0.858
ENSGMOG00000013274 Gadus morhua ENSGMOG00000013274 I 0.858
XP_002938246 Xenopus tropicalis XP_002938246 N 0.854
GYMLUDRAFT_839581 Gymnopus luxurians GYMLUDRAFT_839581 N 0.852
ENSPMAG00000009581 Petromyzon marinus ENSPMAG00000009581 N 0.846
ENSONIG00000013775 Oreochromis niloticus ENSONIG00000013775 N 0.846
usf2 Gasterosteus aculeatus ENSGACG00000002481 N 0.846
USF2 Gorilla gorilla ENSGGOG00000000767 N 0.846
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.846
L889_g9731 Steinernema feltiae L889_g9731 N 0.845
Mlx Mus musculus ENSMUSG00000017801 D 0.841
ENSXMAG00000005137 Xiphophorus maculatus ENSXMAG00000005137 I 0.841
ENSPFOG00000017027 Poecilia formosa ENSPFOG00000017027 I 0.841
ENSGMOG00000010933 Gadus morhua ENSGMOG00000010933 N 0.529