Msgn1 (Dipodomys ordii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSDORG00000003509 T033854_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MSGN1
M04144_2.00
Homo sapiens
NVMCAWWTGGYN

NRCCAWWTGKBN
SELEX
Yin et al.(2017)
MSGN1_eDBD_HT-SELEX
0.914 1.000
Msgn1
M08772_2.00
Mus musculus
NNRMCAAATGGY

RCCATTTGKYNN
Misc
Kulakovskiy et al.(2013)
MSGN1_MOUSE.H11MO.0.C
0.914 1.000
MSGN1
M04145_2.00
Homo sapiens
NRMCAWWTGSYN

NRSCAWWTGKYN
SELEX
Yin et al.(2017)
MSGN1_eDBD_Methyl-HT-SELEX
0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDORP00000003282 bHLH 124 178

Links

Other bHLH family TFs
Other Dipodomys ordii TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00064p00208400 Amborella trichopoda AMTR_s00064p00208400 I 0.000
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.000
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.000
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.000
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.000
Bo2g032920 Brassica oleracea Bo2g032920 I 0.000
Bra035639 Brassica rapa Bra035639 I 0.000
PK15505.1 Cannabis sativa PK15505.1 D 0.000
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.000
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.000
Cla017100 Citrullus lanatus Cla017100 I 0.000
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.000
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.000
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.000
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.000
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.000
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.000
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
LPERR05G05410 Leersia perrieri LPERR05G05410 I 0.000
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.000
MDP0000119495 Malus domestica MDP0000119495 I 0.000
MDP0000252899 Malus domestica MDP0000252899 I 0.000
MDP0000782908 Malus domestica MDP0000782908 I 0.000
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.000
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.000
MTR_2g039620 Medicago truncatula MTR_2g039620 N 0.000
mgf018190m Mimulus guttatus mgf018190m I 0.000
GSMUA_Achr7G09080_001 Musa acuminata GSMUA_Achr7G09080_001 N 0.000
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.000
OBART05G06380 Oryza barthii OBART05G06380 I 0.000
OB05G15870 Oryza brachyantha OB05G15870 I 0.000
ORGLA05G0058200 Oryza glaberrima ORGLA05G0058200 I 0.000
OGLUM05G06690 Oryza glumaepatula OGLUM05G06690 I 0.000
BGIOSGA033976 Oryza indica BGIOSGA033976 I 0.000
ONIVA05G07120 Oryza nivara ONIVA05G07120 I 0.000
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.000
ORUFI05G06870 Oryza rufipogon ORUFI05G06870 I 0.000
OS05G0199800 Oryza sativa OS05G0199800 I 0.000
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.000
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.000
PDK_20s1427741g002 Phoenix dactylifera PDK_20s1427741g002 I 0.000
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.000
Pm027191 Prunus mume Pm027191 I 0.000
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.000
29912.m005337 Ricinus communis 29912.m005337 I 0.000
SapurV1A.0108s0270 Salix purpurea SapurV1A.0108s0270 I 0.000
Si024546m.g Setaria italica Si024546m.g I 0.000
Solyc07g039570.2 Solanum lycopersicum Solyc07g039570.2 I 0.000
PGSC0003DMG400022043 Solanum tuberosum PGSC0003DMG400022043 I 0.000
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.000
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.000