CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MSGN1
(
Homo sapiens
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSG00000151379
T034298_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in mesoderm formation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within segment specification and somitogenesis. Predicted to be part of chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MSGN1
M04144_2.00
Homo sapiens
NVMCAWWTGGYN
NRCCAWWTGKBN
SELEX
Yin et al.(2017)
MSGN1_eDBD_HT-SELEX
(Direct)
(Direct)
MSGN1
M04145_2.00
Homo sapiens
NRMCAWWTGSYN
NRSCAWWTGKYN
SELEX
Yin et al.(2017)
MSGN1_eDBD_Methyl-HT-SELEX
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Msgn1
M08772_2.00
Mus musculus
NNRMCAAATGGY
RCCATTTGKYNN
Misc
Kulakovskiy et al.(2013)
MSGN1_MOUSE.H11MO.0.C
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000281047
bHLH
125
179
RRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKIQTLKYTIKYIGELT
Links
Other
bHLH
family TFs
Other
Homo sapiens
TFs
56 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Msgn1
Rattus norvegicus
ENSRNOG00000028518
I
0.914
MSGN1
Pteropus vampyrus
ENSPVAG00000015666
I
0.914
MSGN1
Sorex araneus
ENSSARG00000007866
I
0.914
MSGN1
Sus scrofa
ENSSSCG00000026538
I
0.914
ENSSTOG00000013981
Ictidomys tridecemlineatus
ENSSTOG00000013981
I
0.914
MSGN1
Pan troglodytes
ENSPTRG00000011679
I
0.914
ENSPPYG00000012628
Pongo abelii
ENSPPYG00000012628
I
0.914
MSGN1
Oryctolagus cuniculus
ENSOCUG00000000309
I
0.914
ENSOARG00000016765
Ovis aries
ENSOARG00000016765
I
0.914
MSGN1
Otolemur garnettii
ENSOGAG00000012569
I
0.914
ENSPANG00000004064
Papio anubis
ENSPANG00000004064
I
0.914
MSGN1
Procavia capensis
ENSPCAG00000015116
I
0.914
MSGN1
Tupaia belangeri
ENSTBEG00000001387
I
0.914
MSGN1
Taeniopygia guttata
ENSTGUG00000013122
I
0.914
ENSP00000281047
Macaca fascicularis
ENSP00000281047
I
0.914
ENSP00000281047-D1
Bos grunniens
ENSP00000281047-D1
I
0.914
Gfo_R015241
Geospiza fortis
Gfo_R015241
I
0.914
Myotis_brandtii_MSGN1_10020188
Myotis brandtii
Myotis_brandtii_MSGN1_10020188
I
0.914
Tal_R008386
Tyto alba
Tal_R008386
I
0.914
Brh_R011720
Buceros rhinoceros
Brh_R011720
I
0.914
Alligator_sinensis_CCG020380.1
Alligator sinensis
Alligator_sinensis_CCG020380.1
I
0.914
ENSTSYG00000003733
Tarsius syrichta
ENSTSYG00000003733
I
0.914
MSGN1
Tursiops truncatus
ENSTTRG00000015917
I
0.914
Aan_R015364
Calypte anna
Aan_R015364
I
0.914
Afo_R001760
Aptenodytes forsteri
Afo_R001760
I
0.914
ENSNLEG00000018810
Nomascus leucogenys
ENSNLEG00000018810
I
0.914
MSGN1
Ornithorhynchus anatinus
ENSOANG00000002188
I
0.914
MSGN1
Dasypus novemcinctus
ENSDNOG00000013441
I
0.914
Msgn1
Dipodomys ordii
ENSDORG00000003509
I
0.914
MSGN1
Equus caballus
ENSECAG00000002724
I
0.914
MSGN1
Erinaceus europaeus
ENSEEUG00000015222
I
0.914
ENSCSAG00000000377
Chlorocebus sabaeus
ENSCSAG00000000377
I
0.914
MSGN1
Callithrix jacchus
ENSCJAG00000032633
I
0.914
ENSAMEG00000019874
Ailuropoda melanoleuca
ENSAMEG00000019874
I
0.914
ENSAPLG00000001852
Anas platyrhynchos
ENSAPLG00000001852
I
0.914
MSGN1
Bos taurus
ENSBTAG00000039113
I
0.914
MSGN1
Canis familiaris
ENSCAFG00000003750
I
0.914
MSGN1
Felis catus
ENSFCAG00000013583
I
0.914
ENSFALG00000001820
Ficedula albicollis
ENSFALG00000001820
I
0.914
MSGN1
Macaca mulatta
ENSMMUG00000008141
I
0.914
MSGN1
Meleagris gallopavo
ENSMGAG00000016374
I
0.914
ENSMICG00000010842
Microcebus murinus
ENSMICG00000010842
I
0.914
ENSMPUG00000019484
Mustela putorius furo
ENSMPUG00000019484
I
0.914
MSGN1
Loxodonta africana
ENSLAFG00000015319
I
0.914
MSGN1
Gorilla gorilla
ENSGGOG00000012168
I
0.914
Msgn1
Mus musculus
ENSMUSG00000047002
D
0.914
MSGN1
Myotis lucifugus
ENSMLUG00000007599
I
0.914
MSGN1
Cavia porcellus
ENSCPOG00000003061
I
0.894
ENSACAG00000001604
Anolis carolinensis
ENSACAG00000001604
I
0.894
MSGN1
Gallus gallus
ENSGALG00000016469
I
0.893
MSGN1
Monodelphis domestica
ENSMODG00000004056
I
0.879
ENSMEUG00000006206
Macropus eugenii
ENSMEUG00000006206
I
0.879
Pvit_07087
Pogona vitticeps
Pvit_07087
I
0.873
Ogr03919
Ophisaurus gracilis
Ogr03919
I
0.859
ENSLOCG00000017878
Lepisosteus oculatus
ENSLOCG00000017878
I
0.855
Cmyd_10010636
Chelonia mydas
Cmyd_10010636
I
0.847