CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NHLH2
(
Homo sapiens
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSG00000177551
T034323_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH
DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
(Direct)
(Direct)
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
(Direct)
(Direct)
NHLH2
M09878_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN
NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.914
1.000
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB
VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.914
0.981
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK
MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.914
0.981
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.914
0.981
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.914
0.981
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY
RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.914
0.981
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN
NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.914
0.981
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN
NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.914
0.981
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH
DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.914
0.981
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.914
0.981
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH
DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.891
0.904
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH
DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.891
0.904
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH
DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.891
0.904
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC
GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.891
0.904
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM
KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.891
0.904
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC
GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.891
0.904
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY
RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.891
0.904
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000322087
bHLH
78
130
YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN
ENSP00000358519
bHLH
78
130
YRSAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN
ENSP00000405062
bHLH
78
107
YRSAHATRERIRVEAFNLAFAELRKLLPTL
Links
Other
bHLH
family TFs
Other
Homo sapiens
TFs
172 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000000632
Pongo abelii
ENSPPYG00000000632
I
0.914
NHLH1
Procavia capensis
ENSPCAG00000009061
I
0.914
ENSPANG00000011970
Papio anubis
ENSPANG00000011970
I
0.914
ENSPANG00000001481
Papio anubis
ENSPANG00000001481
I
0.914
ENSPPYG00000000988
Pongo abelii
ENSPPYG00000000988
I
0.914
NHLH2
Pan troglodytes
ENSPTRG00000001149
I
0.914
Nhlh1
Rattus norvegicus
ENSRNOG00000005166
I
0.914
NHLH2
Pteropus vampyrus
ENSPVAG00000012688
I
0.914
NHLH1
Pteropus vampyrus
ENSPVAG00000007987
I
0.914
NHLH1
Pan troglodytes
ENSPTRG00000001551
I
0.914
NHLH2
Ochotona princeps
ENSOPRG00000006661
I
0.914
NHLH2
Otolemur garnettii
ENSOGAG00000034540
I
0.914
ENSMPUG00000019473
Mustela putorius furo
ENSMPUG00000019473
I
0.914
ENSMPUG00000019387
Mustela putorius furo
ENSMPUG00000019387
I
0.914
NHLH1
Monodelphis domestica
ENSMODG00000024591
I
0.914
NHLH2
Monodelphis domestica
ENSMODG00000023228
I
0.914
Nhlh2
Mus musculus
ENSMUSG00000048540
D
0.914
Nhlh1
Mus musculus
ENSMUSG00000051251
D
0.914
NHLH1
Otolemur garnettii
ENSOGAG00000010592
I
0.914
NHLH2
Oryctolagus cuniculus
ENSOCUG00000015744
I
0.914
NHLH2
Ornithorhynchus anatinus
ENSOANG00000009820
I
0.914
ENSNLEG00000013637
Nomascus leucogenys
ENSNLEG00000013637
I
0.914
Nhlh2
Rattus norvegicus
ENSRNOG00000054375
I
0.914
ENSSHAG00000006613
Sarcophilus harrisii
ENSSHAG00000006613
I
0.914
ENSP00000302189
Macaca fascicularis
ENSP00000302189
I
0.914
Cmyd_10014342
Chelonia mydas
Cmyd_10014342
I
0.914
Cflo_11933--XP_001122281.1_APIME
Camponotus floridanus
Cflo_11933--XP_001122281.1_APIME
I
0.914
Alligator_sinensis_CCG011163.1
Alligator sinensis
Alligator_sinensis_CCG011163.1
I
0.914
ENSP00000358519-D1
Bos grunniens
ENSP00000358519-D1
I
0.914
ENSP00000405915
Macaca fascicularis
ENSP00000405915
I
0.914
nhlh1.L
Xenopus laevis
XB-GENE-989792
I
0.914
nhlh1
Xenopus tropicalis
XB-GENE-989790
I
0.914
nhlh1.S
Xenopus laevis
XB-GENE-6252028
I
0.914
Hsal_11874--XP_001122281.1_APIME
Harpegnathos saltator
Hsal_11874--XP_001122281.1_APIME
I
0.914
NV10733
Nasonia vitripennis
NV10733
I
0.914
HelroG138545
Helobdella robusta
HelroG138545
I
0.914
ENSSTOG00000019698
Ictidomys tridecemlineatus
ENSSTOG00000019698
I
0.914
NHLH2
Sus scrofa
ENSSSCG00000006744
I
0.914
NHLH1
Sus scrofa
ENSSSCG00000006384
I
0.914
ENSSHAG00000015472
Sarcophilus harrisii
ENSSHAG00000015472
I
0.914
ENSSTOG00000027988
Ictidomys tridecemlineatus
ENSSTOG00000027988
I
0.914
NHLH1
Taeniopygia guttata
ENSTGUG00000013389
I
0.914
GB53325
Apis mellifera
GB53325
I
0.914
GB49291
Apis mellifera
GB49291
I
0.914
NHLH2
Tursiops truncatus
ENSTTRG00000003112
I
0.914
ENSTSYG00000000582
Tarsius syrichta
ENSTSYG00000000582
I
0.914
NHLH1
Macaca mulatta
ENSMMUG00000021865
I
0.914
NHLH1
Tursiops truncatus
ENSTTRG00000001840
I
0.914
NHLH2
Dasypus novemcinctus
ENSDNOG00000008961
I
0.914
ENSCSAG00000000172
Chlorocebus sabaeus
ENSCSAG00000000172
I
0.914
ENSCSAG00000000087
Chlorocebus sabaeus
ENSCSAG00000000087
I
0.914
NHLH1
Dasypus novemcinctus
ENSDNOG00000038600
I
0.914
ENSMMUG00000008971
Macaca mulatta
ENSMMUG00000008971
I
0.914
ENSFCAG00000028313
Felis catus
ENSFCAG00000028313
I
0.914
ENSFALG00000006103
Ficedula albicollis
ENSFALG00000006103
I
0.914
NHLH1
Echinops telfairi
ENSETEG00000009677
I
0.914
NHLH2
Cavia porcellus
ENSCPOG00000026593
I
0.914
NHLH1
Cavia porcellus
ENSCPOG00000021596
I
0.914
NHLH2
Bos taurus
ENSBTAG00000015067
I
0.914
NHLH1
Bos taurus
ENSBTAG00000020027
I
0.914
ACEP10202
Atta cephalotes
ACEP10202
I
0.914
NHLH2
Canis familiaris
ENSCAFG00000009767
I
0.914
NHLH1
Canis familiaris
ENSCAFG00000023513
I
0.914
NHLH2
Callithrix jacchus
ENSCJAG00000012807
I
0.914
NHLH1
Callithrix jacchus
ENSCJAG00000005775
I
0.914
NHLH1
Homo sapiens
ENSG00000171786
D
0.914
NHLH1
Equus caballus
ENSECAG00000004612
I
0.914
ENSLACG00000011363
Latimeria chalumnae
ENSLACG00000011363
I
0.914
ENSMICG00000002851
Microcebus murinus
ENSMICG00000002851
I
0.914
NHLH2
Loxodonta africana
ENSLAFG00000007456
I
0.914
NHLH1
Loxodonta africana
ENSLAFG00000011163
I
0.914
ENSMEUG00000003022
Macropus eugenii
ENSMEUG00000003022
I
0.914
NHLH1
Gorilla gorilla
ENSGGOG00000015736
I
0.914
NHLH1
Microcebus murinus
ENSMICG00000012700
I
0.914
NHLH2
Gorilla gorilla
ENSGGOG00000008283
I
0.914
NHLH2
Myotis lucifugus
ENSMLUG00000015989
I
0.914
NHLH2
Anolis carolinensis
ENSACAG00000003304
I
0.914
Pvit_07565
Pogona vitticeps
Pvit_07565
I
0.894
YQE_11502
Dendroctonus ponderosae
YQE_11502
I
0.894
Ocbimv22001940m.g
Octopus bimaculoides
Ocbimv22001940m.g
I
0.894
LDEC000946
Leptinotarsa decemlineata
LDEC000946
I
0.894
HHAL001761-PA
Halyomorpha halys
HHAL001761-PA
I
0.894
CLEC002464
Cimex lectularius
CLEC002464
I
0.894
Sakowv30004475m.g
Saccoglossus kowalevskii
Sakowv30004475m.g
I
0.894
Aan_R014318
Calypte anna
Aan_R014318
I
0.894
Alligator_sinensis_CCG018876.1
Alligator sinensis
Alligator_sinensis_CCG018876.1
I
0.894
ADAC006978
Anopheles darlingi
ADAC006978
I
0.894
Cmyd_10010324
Chelonia mydas
Cmyd_10010324
I
0.894
DAPPUDRAFT_66944
Daphnia pulex
DAPPUDRAFT_66944
I
0.894
BGIBMGA008476
Bombyx mori
BGIBMGA008476
I
0.894
ENSACAG00000010649
Anolis carolinensis
ENSACAG00000010649
I
0.894
AGAP004907
Anopheles gambiae
AGAP004907
I
0.894
Gfo_R014815
Geospiza fortis
Gfo_R014815
I
0.894
CapteG162858
Capitella teleta
CapteG162858
I
0.894
Ogr08231
Ophisaurus gracilis
Ogr08231
I
0.894
AFUN005050
Anopheles funestus
AFUN005050
I
0.894
AQUA014034
Anopheles quadriannulatus
AQUA014034
I
0.894
AMIN011405
Anopheles minimus
AMIN011405
I
0.894
AMEM004741
Anopheles merus
AMEM004741
I
0.894
AMEC009920
Anopheles melas
AMEC009920
I
0.894
ASIS019843
Anopheles sinensis
ASIS019843
I
0.894
ASTEI10641
Anopheles stephensi
ASTEI10641
I
0.894
PPAI007861
Phlebotomus papatasi
PPAI007861
I
0.894
LLOJ002704
Lutzomyia longipalpis
LLOJ002704
I
0.894
BGLB013717
Biomphalaria glabrata
BGLB013717
I
0.894
AMAM022568
Anopheles maculatus
AMAM022568
I
0.894
YQE_04623
Dendroctonus ponderosae
YQE_04623
I
0.894
ACOM036372
Anopheles coluzzii
ACOM036372
I
0.894
AATE010880
Anopheles atroparvus
AATE010880
I
0.894
AARA003512
Anopheles arabiensis
AARA003512
I
0.894
AALB004585
Anopheles albimanus
AALB004585
I
0.894
ACUA009159
Anopheles culicifacies
ACUA009159
I
0.894
ACUA026679
Anopheles culicifacies
ACUA026679
I
0.894
AFAF009162
Anopheles farauti
AFAF009162
I
0.894
AEPI011485
Anopheles epiroticus
AEPI011485
I
0.894
ADIR001683
Anopheles dirus
ADIR001683
I
0.894
ACYPI007008
Acyrthosiphon pisum
ACYPI007008
I
0.894
LotgiG133561
Lottia gigantea
LotgiG133561
I
0.894
ENSAMXG00000026006
Astyanax mexicanus
ENSAMXG00000026006
I
0.894
ENSPFOG00000020651
Poecilia formosa
ENSPFOG00000020651
I
0.894
nhlh2
Gasterosteus aculeatus
ENSGACG00000014053
I
0.894
NHLH1
Gallus gallus
ENSGALG00000025817
I
0.894
ENSONIG00000021015
Oreochromis niloticus
ENSONIG00000021015
I
0.894
nhlh2
Danio rerio
ENSDARG00000025495
I
0.894
nhlh2
Tetraodon nigroviridis
ENSTNIG00000010331
I
0.894
YQE_00442
Dendroctonus ponderosae
YQE_00442
I
0.894
ENSXMAG00000020348
Xiphophorus maculatus
ENSXMAG00000020348
I
0.894
AAEL004428
Aedes aegypti
AAEL004428
I
0.894
nhlh2
Takifugu rubripes
ENSTRUG00000003636
I
0.894
KGM_06532
Danaus plexippus
KGM_06532
I
0.894
ISCW014797
Ixodes scapularis
ISCW014797
I
0.894
RPRC001173
Rhodnius prolixus
RPRC001173
I
0.894
ENSMGAG00000016096
Meleagris gallopavo
ENSMGAG00000016096
I
0.894
SMAR007908
Strigamia maritima
SMAR007908
I
0.894
SPU_009231
Strongylocentrotus purpuratus
SPU_009231
I
0.894
TC007725
Tribolium castaneum
TC007725
I
0.894
L798_00559
Zootermopsis nevadensis
L798_00559
I
0.894
PHUM229200
Pediculus humanus
PHUM229200
I
0.894
ENSGMOG00000020309
Gadus morhua
ENSGMOG00000020309
I
0.894
ENSLOCG00000017787
Lepisosteus oculatus
ENSLOCG00000017787
I
0.894
MCINX015834
Melitaea cinxia
MCINX015834
I
0.894
GA15893
Drosophila pseudoobscura
FBgn0075909
I
0.891
GF20856
Drosophila ananassae
FBgn0097862
I
0.891
GG18528
Drosophila erecta
FBgn0110741
I
0.891
HLH4C
Drosophila melanogaster
FBgn0011277
D
0.891
MDOA013398
Musca domestica
MDOA013398
I
0.891
MDOA007431
Musca domestica
MDOA007431
I
0.891
GL14555
Drosophila persimilis
FBgn0152160
I
0.891
GK16457
Drosophila willistoni
FBgn0218459
I
0.891
GE16844
Drosophila yakuba
FBgn0234336
I
0.891
GH17630
Drosophila grimshawi
FBgn0125100
I
0.891
LCUP012274
Lucilia cuprina
LCUP012274
I
0.891
GJ15714
Drosophila virilis
FBgn0202902
I
0.891
GD16284
Drosophila simulans
FBgn0187911
I
0.891
GI16068
Drosophila mojavensis
FBgn0138817
I
0.891
GM12676
Drosophila sechellia
FBgn0167612
I
0.891
ENSAMEG00000010851
Ailuropoda melanoleuca
ENSAMEG00000010851
I
0.890
Cmyd_10001044
Chelonia mydas
Cmyd_10001044
I
0.882
nRc.2.0.1.g35713
Romanomermis culicivorax
nRc.2.0.1.g35713
I
0.870
CGI_10002829
Crassostrea gigas
CGI_10002829
I
0.870
HelroG94416
Helobdella robusta
HelroG94416
I
0.870
HelroG153470
Helobdella robusta
HelroG153470
I
0.870
MESCA010279
Megaselia scalaris
MESCA010279
I
0.867
ENSONIG00000020673
Oreochromis niloticus
ENSONIG00000020673
I
0.866
BXY_0231500
Bursaphelenchus xylophilus
BXY_0231500
I
0.864
Brh_R005283
Buceros rhinoceros
Brh_R005283
I
0.861
Nhlh1
Dipodomys ordii
ENSDORG00000003184
I
0.861
SMU15030866
Schmidtea mediterranea
SMU15030866
I
0.857
HPBE_0000907401
Heligmosomoides bakeri
HPBE_0000907401
I
0.851
ACAC_0000390701
Angiostrongylus cantonensis
ACAC_0000390701
I
0.851
HMEL010237
Heliconius melpomene
HMEL010237
I
0.838