nhlh2 (Gasterosteus aculeatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSGACG00000014053 T034445_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH

DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.911 0.923
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH

DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.911 0.923
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH

DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.911 0.923
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC

GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.911 0.923
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM

KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.911 0.923
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC

GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.911 0.923
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY

RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.911 0.923
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN

NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.894 0.981
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH

DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.894 0.981
NHLH2
M09878_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.894 0.981
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.894 0.981
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB

VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.894 0.962
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK

MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.894 0.962
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.894 0.962
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.894 0.962
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY

RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.894 0.962
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN

NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.894 0.962
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN

NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.894 0.962
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH

DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.894 0.962
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.894 0.962
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000018550 bHLH 66 118

Links

Other bHLH family TFs
Other Gasterosteus aculeatus TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL004428 Aedes aegypti AAEL004428 I 0.914
AALB004585 Anopheles albimanus AALB004585 I 0.914
Aan_R014318 Calypte anna Aan_R014318 I 0.894
AARA003512 Anopheles arabiensis AARA003512 I 0.914
AATE010880 Anopheles atroparvus AATE010880 I 0.914
ACEP10202 Atta cephalotes ACEP10202 I 0.894
ACOM036372 Anopheles coluzzii ACOM036372 I 0.914
ACUA009159 Anopheles culicifacies ACUA009159 I 0.914
ACUA026679 Anopheles culicifacies ACUA026679 I 0.914
ACYPI007008 Acyrthosiphon pisum ACYPI007008 I 0.914
ADAC006978 Anopheles darlingi ADAC006978 I 0.914
ADIR001683 Anopheles dirus ADIR001683 I 0.914
AEPI011485 Anopheles epiroticus AEPI011485 I 0.914
AFAF009162 Anopheles farauti AFAF009162 I 0.914
AFUN005050 Anopheles funestus AFUN005050 I 0.914
AGAP004907 Anopheles gambiae AGAP004907 I 0.914
Alligator_sinensis_CCG011163.1 Alligator sinensis Alligator_sinensis_CCG011163.1 I 0.894
Alligator_sinensis_CCG018876.1 Alligator sinensis Alligator_sinensis_CCG018876.1 I 0.894
AMAM022568 Anopheles maculatus AMAM022568 I 0.914
AMEC009920 Anopheles melas AMEC009920 I 0.914
AMEM004741 Anopheles merus AMEM004741 I 0.914
AMIN011405 Anopheles minimus AMIN011405 I 0.914
AQUA014034 Anopheles quadriannulatus AQUA014034 I 0.914
ASIS019843 Anopheles sinensis ASIS019843 I 0.914
ASTEI10641 Anopheles stephensi ASTEI10641 I 0.914
BGIBMGA008476 Bombyx mori BGIBMGA008476 I 0.894
BGLB013717 Biomphalaria glabrata BGLB013717 I 0.914
Brh_R005283 Buceros rhinoceros Brh_R005283 I 0.861
BXY_0231500 Bursaphelenchus xylophilus BXY_0231500 I 0.864
CapteG162858 Capitella teleta CapteG162858 I 0.914
Cflo_11933--XP_001122281.1_APIME Camponotus floridanus Cflo_11933--XP_001122281.1_APIME I 0.894
CGI_10002829 Crassostrea gigas CGI_10002829 I 0.870
CLEC002464 Cimex lectularius CLEC002464 I 0.914
Cmyd_10001044 Chelonia mydas Cmyd_10001044 I 0.882
Cmyd_10010324 Chelonia mydas Cmyd_10010324 I 0.894
Cmyd_10014342 Chelonia mydas Cmyd_10014342 I 0.894
DAPPUDRAFT_66944 Daphnia pulex DAPPUDRAFT_66944 I 0.894
NHLH2 Anolis carolinensis ENSACAG00000003304 I 0.894
ENSACAG00000010649 Anolis carolinensis ENSACAG00000010649 I 0.894
ENSAMEG00000010851 Ailuropoda melanoleuca ENSAMEG00000010851 I 0.870
ENSAMXG00000026006 Astyanax mexicanus ENSAMXG00000026006 I 0.914
NHLH2 Bos taurus ENSBTAG00000015067 I 0.894
NHLH1 Bos taurus ENSBTAG00000020027 I 0.894
NHLH2 Canis familiaris ENSCAFG00000009767 I 0.894
NHLH1 Canis familiaris ENSCAFG00000023513 I 0.894
NHLH1 Callithrix jacchus ENSCJAG00000005775 I 0.894
NHLH2 Callithrix jacchus ENSCJAG00000012807 I 0.894
NHLH1 Cavia porcellus ENSCPOG00000021596 I 0.894
NHLH2 Cavia porcellus ENSCPOG00000026593 I 0.894
ENSCSAG00000000087 Chlorocebus sabaeus ENSCSAG00000000087 I 0.894
ENSCSAG00000000172 Chlorocebus sabaeus ENSCSAG00000000172 I 0.894
nhlh2 Danio rerio ENSDARG00000025495 I 0.914
NHLH2 Dasypus novemcinctus ENSDNOG00000008961 I 0.894
NHLH1 Dasypus novemcinctus ENSDNOG00000038600 I 0.894
NHLH1 Equus caballus ENSECAG00000004612 I 0.894
NHLH1 Echinops telfairi ENSETEG00000009677 I 0.894
ENSFALG00000006103 Ficedula albicollis ENSFALG00000006103 I 0.894
ENSFCAG00000028313 Felis catus ENSFCAG00000028313 I 0.894
NHLH1 Homo sapiens ENSG00000171786 D 0.894
NHLH2 Homo sapiens ENSG00000177551 D 0.894
NHLH1 Gallus gallus ENSGALG00000025817 I 0.894
NHLH2 Gorilla gorilla ENSGGOG00000008283 I 0.894
NHLH1 Gorilla gorilla ENSGGOG00000015736 I 0.894
ENSGMOG00000020309 Gadus morhua ENSGMOG00000020309 I 0.914
ENSLACG00000011363 Latimeria chalumnae ENSLACG00000011363 I 0.894
NHLH2 Loxodonta africana ENSLAFG00000007456 I 0.894
NHLH1 Loxodonta africana ENSLAFG00000011163 I 0.894
ENSLOCG00000017787 Lepisosteus oculatus ENSLOCG00000017787 I 0.914
ENSMEUG00000003022 Macropus eugenii ENSMEUG00000003022 I 0.894
ENSMGAG00000016096 Meleagris gallopavo ENSMGAG00000016096 I 0.894
ENSMICG00000002851 Microcebus murinus ENSMICG00000002851 I 0.894
NHLH1 Microcebus murinus ENSMICG00000012700 I 0.894
NHLH2 Myotis lucifugus ENSMLUG00000015989 I 0.894
ENSMMUG00000008971 Macaca mulatta ENSMMUG00000008971 I 0.894
NHLH1 Macaca mulatta ENSMMUG00000021865 I 0.894
NHLH2 Monodelphis domestica ENSMODG00000023228 I 0.894
NHLH1 Monodelphis domestica ENSMODG00000024591 I 0.894
ENSMPUG00000019387 Mustela putorius furo ENSMPUG00000019387 I 0.894
ENSMPUG00000019473 Mustela putorius furo ENSMPUG00000019473 I 0.894
Nhlh2 Mus musculus ENSMUSG00000048540 D 0.894
Nhlh1 Mus musculus ENSMUSG00000051251 D 0.894
ENSNLEG00000013637 Nomascus leucogenys ENSNLEG00000013637 I 0.894
NHLH2 Ornithorhynchus anatinus ENSOANG00000009820 I 0.894
NHLH2 Oryctolagus cuniculus ENSOCUG00000015744 I 0.894
NHLH1 Otolemur garnettii ENSOGAG00000010592 I 0.894
NHLH2 Otolemur garnettii ENSOGAG00000034540 I 0.894
ENSONIG00000020673 Oreochromis niloticus ENSONIG00000020673 I 0.846
ENSONIG00000021015 Oreochromis niloticus ENSONIG00000021015 I 0.914
NHLH2 Ochotona princeps ENSOPRG00000006661 I 0.894
ENSP00000302189 Macaca fascicularis ENSP00000302189 I 0.894
ENSP00000358519-D1 Bos grunniens ENSP00000358519-D1 I 0.894
ENSP00000405915 Macaca fascicularis ENSP00000405915 I 0.894
ENSPANG00000001481 Papio anubis ENSPANG00000001481 I 0.894
ENSPANG00000011970 Papio anubis ENSPANG00000011970 I 0.894
NHLH1 Procavia capensis ENSPCAG00000009061 I 0.894
ENSPFOG00000020651 Poecilia formosa ENSPFOG00000020651 I 0.914
ENSPPYG00000000632 Pongo abelii ENSPPYG00000000632 I 0.894
ENSPPYG00000000988 Pongo abelii ENSPPYG00000000988 I 0.894
NHLH2 Pan troglodytes ENSPTRG00000001149 I 0.894
NHLH1 Pan troglodytes ENSPTRG00000001551 I 0.894
NHLH1 Pteropus vampyrus ENSPVAG00000007987 I 0.894
NHLH2 Pteropus vampyrus ENSPVAG00000012688 I 0.894
Nhlh1 Rattus norvegicus ENSRNOG00000005166 I 0.894
Nhlh2 Rattus norvegicus ENSRNOG00000054375 I 0.894
ENSSHAG00000006613 Sarcophilus harrisii ENSSHAG00000006613 I 0.894
ENSSHAG00000015472 Sarcophilus harrisii ENSSHAG00000015472 I 0.894
NHLH1 Sus scrofa ENSSSCG00000006384 I 0.894
NHLH2 Sus scrofa ENSSSCG00000006744 I 0.894
ENSSTOG00000019698 Ictidomys tridecemlineatus ENSSTOG00000019698 I 0.894
ENSSTOG00000027988 Ictidomys tridecemlineatus ENSSTOG00000027988 I 0.894
NHLH1 Taeniopygia guttata ENSTGUG00000013389 I 0.894
nhlh2 Tetraodon nigroviridis ENSTNIG00000010331 I 0.914
nhlh2 Takifugu rubripes ENSTRUG00000003636 I 0.914
ENSTSYG00000000582 Tarsius syrichta ENSTSYG00000000582 I 0.894
NHLH1 Tursiops truncatus ENSTTRG00000001840 I 0.894
NHLH2 Tursiops truncatus ENSTTRG00000003112 I 0.894
ENSXMAG00000020348 Xiphophorus maculatus ENSXMAG00000020348 I 0.914
HLH4C Drosophila melanogaster FBgn0011277 D 0.911
GA15893 Drosophila pseudoobscura FBgn0075909 I 0.911
GF20856 Drosophila ananassae FBgn0097862 I 0.911
GG18528 Drosophila erecta FBgn0110741 I 0.911
GH17630 Drosophila grimshawi FBgn0125100 I 0.911
GI16068 Drosophila mojavensis FBgn0138817 I 0.911
GL14555 Drosophila persimilis FBgn0152160 I 0.911
GM12676 Drosophila sechellia FBgn0167612 I 0.911
GD16284 Drosophila simulans FBgn0187911 I 0.911
GJ15714 Drosophila virilis FBgn0202902 I 0.911
GK16457 Drosophila willistoni FBgn0218459 I 0.911
GE16844 Drosophila yakuba FBgn0234336 I 0.911
GB49291 Apis mellifera GB49291 I 0.894
GB53325 Apis mellifera GB53325 I 0.894
Gfo_R014815 Geospiza fortis Gfo_R014815 I 0.914
HelroG138545 Helobdella robusta HelroG138545 I 0.894
HelroG153470 Helobdella robusta HelroG153470 I 0.870
HelroG94416 Helobdella robusta HelroG94416 I 0.890
HHAL001761-PA Halyomorpha halys HHAL001761-PA I 0.914
HMEL010237 Heliconius melpomene HMEL010237 I 0.838
Hsal_11874--XP_001122281.1_APIME Harpegnathos saltator Hsal_11874--XP_001122281.1_APIME I 0.894
ISCW014797 Ixodes scapularis ISCW014797 I 0.914
KGM_06532 Danaus plexippus KGM_06532 I 0.894
L798_00559 Zootermopsis nevadensis L798_00559 I 0.914
LCUP012274 Lucilia cuprina LCUP012274 I 0.911
LDEC000946 Leptinotarsa decemlineata LDEC000946 I 0.914
LLOJ002704 Lutzomyia longipalpis LLOJ002704 I 0.914
LotgiG133561 Lottia gigantea LotgiG133561 I 0.914
MCINX015834 Melitaea cinxia MCINX015834 I 0.894
MDOA007431 Musca domestica MDOA007431 I 0.911
MDOA013398 Musca domestica MDOA013398 I 0.911
MESCA010279 Megaselia scalaris MESCA010279 I 0.867
nRc.2.0.1.g35713 Romanomermis culicivorax nRc.2.0.1.g35713 I 0.870
NV10733 Nasonia vitripennis NV10733 I 0.894
Ocbimv22001940m.g Octopus bimaculoides Ocbimv22001940m.g I 0.914
Ogr08231 Ophisaurus gracilis Ogr08231 I 0.894
PHUM229200 Pediculus humanus PHUM229200 I 0.914
PPAI007861 Phlebotomus papatasi PPAI007861 I 0.914
Pvit_07565 Pogona vitticeps Pvit_07565 I 0.894
RPRC001173 Rhodnius prolixus RPRC001173 I 0.914
Sakowv30004475m.g Saccoglossus kowalevskii Sakowv30004475m.g I 0.914
SMAR007908 Strigamia maritima SMAR007908 I 0.914
SMU15030866 Schmidtea mediterranea SMU15030866 I 0.857
SPU_009231 Strongylocentrotus purpuratus SPU_009231 I 0.914
TC007725 Tribolium castaneum TC007725 I 0.914
nhlh1.S Xenopus laevis XB-GENE-6252028 I 0.894
nhlh1 Xenopus tropicalis XB-GENE-989790 I 0.894
nhlh1.L Xenopus laevis XB-GENE-989792 I 0.894
YQE_00442 Dendroctonus ponderosae YQE_00442 I 0.914
YQE_04623 Dendroctonus ponderosae YQE_04623 I 0.914
YQE_11502 Dendroctonus ponderosae YQE_11502 I 0.914