USF1 (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000011338 T034926_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN

NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.914 1.000
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY

RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.914 1.000
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN

NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.914 1.000
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB

VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.914 1.000
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV

BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.914 1.000
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS

SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.914 1.000
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN

NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.914 1.000
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB

VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.914 1.000
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV

BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.914 1.000
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS

SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.914 1.000
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS

SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.914 1.000
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN

NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.914 1.000
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN

NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.914 1.000
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN

NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.914 1.000
USF1
M09869_2.00
Homo sapiens
HCACGTGH

DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.914 1.000
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN

NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000009475 bHLH 200 255

Links

Other bHLH family TFs
Other Loxodonta africana TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
USF1 Pteropus vampyrus ENSPVAG00000005489 I 0.914
Usf1 Rattus norvegicus ENSRNOG00000004255 I 0.914
ENSSHAG00000016124 Sarcophilus harrisii ENSSHAG00000016124 I 0.914
USF1 Sus scrofa ENSSSCG00000006371 I 0.914
USF1 Pan troglodytes ENSPTRG00000001565 I 0.914
ENSPSIG00000008116 Pelodiscus sinensis ENSPSIG00000008116 I 0.914
ENSOGAG00000006705 Otolemur garnettii ENSOGAG00000006705 I 0.914
USF1 Ochotona princeps ENSOPRG00000003858 I 0.914
ENSPANG00000016141 Papio anubis ENSPANG00000016141 I 0.914
ENSPPYG00000000619 Pongo abelii ENSPPYG00000000619 I 0.914
ENSSTOG00000012364 Ictidomys tridecemlineatus ENSSTOG00000012364 I 0.914
USF1 Tupaia belangeri ENSTBEG00000003164 I 0.914
Pvit_07548 Pogona vitticeps Pvit_07548 I 0.914
B39674 Xenopus laevis B39674 I 0.914
usf1 Xenopus tropicalis XB-GENE-5918718 I 0.914
usf1.S Xenopus laevis XB-GENE-6255904 I 0.914
Ogr08237 Ophisaurus gracilis Ogr08237 I 0.914
ENSP00000357000-D1 Bos grunniens ENSP00000357000-D1 I 0.914
USF1 Tursiops truncatus ENSTTRG00000009151 I 0.914
USF1 Vicugna pacos ENSVPAG00000008421 I 0.914
Alligator_sinensis_CCG013447.1 Alligator sinensis Alligator_sinensis_CCG013447.1 I 0.914
ENSMMUP00000002682 Macaca fascicularis ENSMMUP00000002682 I 0.914
ENSAMEG00000015606 Ailuropoda melanoleuca ENSAMEG00000015606 I 0.914
USF1 Oryctolagus cuniculus ENSOCUG00000002352 I 0.914
USF1 Felis catus ENSFCAG00000012307 I 0.914
USF1 Homo sapiens ENSG00000158773 D 0.914
USF1 Gorilla gorilla ENSGGOG00000003935 I 0.914
ENSOARG00000009376 Ovis aries ENSOARG00000009376 I 0.914
USF1 Canis familiaris ENSCAFG00000012689 I 0.914
USF1 Equus caballus ENSECAG00000004755 I 0.914
USF1 Callithrix jacchus ENSCJAG00000005396 I 0.914
USF1 Cavia porcellus ENSCPOG00000003957 I 0.914
ENSCSAG00000002622 Chlorocebus sabaeus ENSCSAG00000002622 I 0.914
ARHGAP30 Dasypus novemcinctus ENSDNOG00000005811 I 0.914
USF1 Bos taurus ENSBTAG00000017873 I 0.914
ENSMEUG00000009683 Macropus eugenii ENSMEUG00000009683 I 0.914
Usf1 Mus musculus ENSMUSG00000026641 D 0.914
ENSNLEG00000013935 Nomascus leucogenys ENSNLEG00000013935 I 0.914
ENSOARG00000003162 Ovis aries ENSOARG00000003162 I 0.914
USF1 Choloepus hoffmanni ENSCHOG00000011010 I 0.914
USF1 Monodelphis domestica ENSMODG00000005443 I 0.914
USF1 Microcebus murinus ENSMICG00000007199 I 0.914
USF1 Myotis lucifugus ENSMLUG00000009179 I 0.914
USF1 Macaca mulatta ENSMMUG00000002003 I 0.914
ENSMPUG00000014181 Mustela putorius furo ENSMPUG00000014181 I 0.912
ENSONIG00000016360 Oreochromis niloticus ENSONIG00000016360 I 0.874
ENSLACG00000001157 Latimeria chalumnae ENSLACG00000001157 I 0.861
ENSLOCG00000000641 Lepisosteus oculatus ENSLOCG00000000641 I 0.843
PHUM287950 Pediculus humanus PHUM287950 I 0.839