FERD3L (Loxodonta africana)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSLAFG00000012782 T034929_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
FERD3L
M04140_2.00
Homo sapiens
GYVACAGCTGKYRC

GYRMCAGCTGTBRC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1
0.914 1.000
FERD3L
M04141_2.00
Homo sapiens
GTRMCAKMTGKYRC

GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2
0.914 1.000
FERD3L
M04142_2.00
Homo sapiens
GTVACAGCTGKYRC

GYRMCAGCTGTBAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1
0.914 1.000
FERD3L
M04143_2.00
Homo sapiens
GTRMCAKMTGKYRC

GYRMCAKMTGKYAC
SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2
0.914 1.000
Fer3
M05993_2.00
Drosophila melanogaster
GKVACAGVTG

CABCTGTBMC
B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937
0.890 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000010687 bHLH 77 129

Links

Other bHLH family TFs
Other Loxodonta africana TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
OS01G0708000 Oryza sativa OS01G0708000 D 0.000
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.000
TRB2 Arabidopsis thaliana AT5G67580 D 0.000
mgf011386m Mimulus guttatus mgf011386m I 0.000
mgf010975m Mimulus guttatus mgf010975m I 0.000
mgf007122m Mimulus guttatus mgf007122m I 0.000
mgf000125m Mimulus guttatus mgf000125m I 0.000
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.000
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.000
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.000
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.000
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.000
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.000
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.000
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.000
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.000
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.000
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.000
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.000
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.000
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.000
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.000
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.000
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.000
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.000
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.000
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.000
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.000
Ca_02722 Cicer arietinum Ca_02722 I 0.000
Ca_08043 Cicer arietinum Ca_08043 I 0.000
Ca_10058 Cicer arietinum Ca_10058 I 0.000
Cla006547 Citrullus lanatus Cla006547 I 0.000
Cla012798 Citrullus lanatus Cla012798 I 0.000
Pm013309 Prunus mume Pm013309 I 0.000
Pm021139 Prunus mume Pm021139 I 0.000
Pm027209 Prunus mume Pm027209 I 0.000
29661.m000926 Ricinus communis 29661.m000926 I 0.000
29706.m001328 Ricinus communis 29706.m001328 I 0.000
29912.m005376 Ricinus communis 29912.m005376 I 0.000
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.000
TCM_029078 Theobroma cacao TCM_029078 I 0.000
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.000
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.000
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.000
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.000
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.000
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.000
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.000
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.000
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.000
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.000
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.000
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.000
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.000
PK00568.1 Cannabis sativa PK00568.1 I 0.000
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.000
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.000
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.000
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.000
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.000
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.000
MDP0000265359 Malus domestica MDP0000265359 I 0.000
MDP0000234807 Malus domestica MDP0000234807 I 0.000
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.000
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.000
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.000
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.000
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.000
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.000
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.000
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.000
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.000
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.000
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.000
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.000
Lus10011546.g Linum usitatissimum Lus10011546.g I 0.000
Lus10019260.g Linum usitatissimum Lus10019260.g I 0.000
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.000
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.000
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.000
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.000
TCM_000807 Theobroma cacao TCM_000807 I 0.000
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.000
Bra037839 Brassica rapa Bra037839 I 0.000
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.000
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.000
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.000
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.000
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.000
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.000
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.000
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.000
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.000
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.000
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.000
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.000
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.000
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.000
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.000
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.000
Bra037837 Brassica rapa Bra037837 I 0.000
Bra030992 Brassica rapa Bra030992 I 0.000
Bra030894 Brassica rapa Bra030894 I 0.000
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.000
TRB3 Arabidopsis thaliana AT3G49850 I 0.000
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.000
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.000
Bo1g081300 Brassica oleracea Bo1g081300 I 0.000
Bo3g096520 Brassica oleracea Bo3g096520 I 0.000
Bo3g184590 Brassica oleracea Bo3g184590 I 0.000
Bo5g023860 Brassica oleracea Bo5g023860 I 0.000
Bo6g116150 Brassica oleracea Bo6g116150 I 0.000
Bo8g067280 Brassica oleracea Bo8g067280 I 0.000
Bo8g104830 Brassica oleracea Bo8g104830 I 0.000
Bo9g019040 Brassica oleracea Bo9g019040 I 0.000
Bra016037 Brassica rapa Bra016037 I 0.000
Bra016598 Brassica rapa Bra016598 I 0.000
Bra024438 Brassica rapa Bra024438 I 0.000
Bra025967 Brassica rapa Bra025967 I 0.000
Bra029978 Brassica rapa Bra029978 I 0.000
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.000
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.000
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.000
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.000
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.000
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.000
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.000
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.000
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.000
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.000
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.000
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.000
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.000
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.000
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.000
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.000
Si002467m.g Setaria italica Si002467m.g I 0.000
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.000
Solyc07g040920.2 Solanum lycopersicum Solyc07g040920.2 I 0.000
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.000
OS01G0589300 Oryza sativa OS01G0589300 I 0.000
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.000
OB01G30760 Oryza brachyantha OB01G30760 I 0.000
OB01G37330 Oryza brachyantha OB01G37330 I 0.000
OBART01G21150 Oryza barthii OBART01G21150 I 0.000
OBART01G28260 Oryza barthii OBART01G28260 I 0.000
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.000
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.000
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.000
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.000
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.000
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.000
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.000
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.000
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.000
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.000
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.000
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.000
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.000
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.000