CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Clock
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000029238
T035699_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN
NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
(Direct)
(Direct)
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
(Direct)
(Direct)
Clock
M09473_2.00
Mus musculus
CACGTGNN
NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH
DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.914
1.000
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN
NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.914
1.000
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.914
1.000
CLOCK
M09849_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.914
1.000
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH
DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01735_2.00
bHLH
15
65
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000074656
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
ENSMUSP00000143939
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
ENSMUSP00000144022
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy