CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Mitf
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000035158
T035711_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This transcription factor serves at a critical point between extracellular signaling and downstream targets in cell specification in early eye and neural crest development. Mutant alleles have been identified that generate distinct phenotypes. Some of these alleles are being used to model the human diseases Waardenburg syndrome IIa and Tietz syndrome. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mitf
M01741_2.00
Mus musculus
NCDCGTGAYN
NRTCACGHGN
PBM
Weirauch et al.(2014)
pTH5465
(Direct)
(Direct)
Mitf
M08765_2.00
Mus musculus
BCHYGTGACY
RGTCACRDGV
Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A
(Direct)
(Direct)
Mitf
M09475_2.00
Mus musculus
GTCACRWGVB
VBCWYGTGAC
Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MITF
M08058_2.00
Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN
ChIP-seq
Mathelier et al.(2014)
MA0620.2
0.914
1.000
MITF
M08740_2.00
Homo sapiens
YCAYGTGACH
DGTCACRTGR
Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A
0.914
1.000
MITF
M09880_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q4
0.914
1.000
MITF
M09881_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q6
0.914
1.000
Tfe3
M01715_2.00
Mus musculus
NCDCRTGAYN
NRTCAYGHGN
PBM
Weirauch et al.(2014)
pTH5057
0.914
0.981
Tfe3
M05833_2.00
Mus musculus
CACGTGAY
RTCACGTG
SMiLE-seq
Isakova et al.(2017)
TFE3
0.914
0.981
Tfe3
M08743_2.00
Mus musculus
TCACGTGACH
DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A
0.914
0.981
Tfe3
M09884_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_01
0.914
0.981
TFE3
M02773_2.00
Homo sapiens
VNCACGTGMY
RKCACGTGNB
SELEX
Jolma et al.(2013)
TFE3_1
0.871
0.963
TFE3
M04058_2.00
Homo sapiens
YVCACGTGAYN
NRTCACGTGBR
SELEX
Yin et al.(2017)
TFE3_eDBD_HT-SELEX
0.871
0.963
TFE3
M08709_2.00
Homo sapiens
TCACGTGACH
DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_HUMAN.H11MO.0.B
0.871
0.963
TFE3
M09790_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_Q6
0.871
0.963
TFE3
M04059_2.00
Homo sapiens
NRTCACATGBB
VVCATGTGAYN
SELEX
Yin et al.(2017)
TFE3_eDBD_Methyl-HT-SELEX
0.871
0.963
Tfec
M00755_2.00
Mus musculus
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2013)
pTH2885
0.870
0.926
Tfec
M01736_2.00
Mus musculus
NCNCRTGVYN
NRBCAYGNGN
PBM
Weirauch et al.(2014)
pTH5065
0.870
0.926
TFEC
M02778_2.00
Homo sapiens
RNCACRTGAB
VTCAYGTGNY
SELEX
Jolma et al.(2013)
TFEC_1
0.870
0.907
TFEC
M04078_2.00
Homo sapiens
NVCACGTGACN
NGTCACGTGBN
SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX
0.870
0.907
TFEC
M04079_2.00
Homo sapiens
VNCATGTGAYN
NRTCACATGNB
SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX
0.870
0.907
Tfeb
M01728_2.00
Mus musculus
CWCGTGAY
RTCACGWG
PBM
Weirauch et al.(2014)
pTH5072
0.855
0.889
TFEB
M02781_2.00
Homo sapiens
RNCACGTGAY
RTCACGTGNY
SELEX
Jolma et al.(2013)
TFEB_1
0.855
0.889
TFEB
M02727_2.00
Homo sapiens
RTCACGTGAY
RTCACGTGAY
SELEX
Jolma et al.(2010)
TFEB_dimer
0.855
0.889
TFEB
M04088_2.00
Homo sapiens
YVCACGTGAYN
NRTCACGTGBR
SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX
0.855
0.889
TFEB
M08718_2.00
Homo sapiens
CACGTGAYY
RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C
0.855
0.889
Tfeb
M08753_2.00
Mus musculus
CACGTGAYY
RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C
0.855
0.889
TFEB
M04089_2.00
Homo sapiens
VNCATGTGAYN
NRTCACATGNB
SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX
0.855
0.889
For this family, TFs with SR scores >
0.838
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01741_2.00
bHLH
15
68
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000044459
bHLH
205
258
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
ENSMUSP00000044938
bHLH
312
365
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
ENSMUSP00000098683
bHLH
296
349
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
ENSMUSP00000108965
bHLH
287
340
KKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQ
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
243 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy