CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Nhlh1
(
Mus musculus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSMUSG00000051251
T035743_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell differentiation. Predicted to be located in nucleus. Is expressed in several structures, including central nervous system; embryo ectoderm; genitourinary system; sensory organ; and skin. Orthologous to human NHLH1 (nescient helix-loop-helix 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY
RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB
VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.914
1.000
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK
MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.914
1.000
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.914
1.000
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH
DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.914
1.000
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN
NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.914
1.000
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN
NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.914
1.000
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH
DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.914
1.000
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.914
1.000
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN
NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.914
0.981
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH
DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.914
0.981
NHLH2
M09878_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.914
0.981
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH
DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.914
0.981
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH
DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.891
0.923
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH
DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.891
0.923
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH
DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.891
0.923
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC
GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.891
0.923
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM
KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.891
0.923
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC
GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.891
0.923
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY
RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.891
0.923
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000057489
bHLH
76
128
YRTAHATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLN
Links
Other
bHLH
family TFs
Other
Mus musculus
TFs
170 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy