CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSONIG00000016360
(
Oreochromis niloticus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSONIG00000016360
T036262_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN
NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.874
0.926
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY
RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.874
0.926
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN
NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.874
0.926
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB
VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.874
0.926
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.874
0.926
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.874
0.926
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.874
0.926
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB
VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.874
0.926
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.874
0.926
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.874
0.926
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.874
0.926
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN
NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.874
0.926
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.874
0.926
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.874
0.926
USF1
M09869_2.00
Homo sapiens
HCACGTGH
DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.874
0.926
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.874
0.926
Usf2
M01752_2.00
Mus musculus
NNCACGTGAN
NTCACGTGNN
PBM
Weirauch et al.(2014)
pTH5265
0.846
0.907
USF2
M04076_2.00
Homo sapiens
NVCACGTGVCN
NGBCACGTGBN
SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX
0.846
0.907
USF2
M08050_2.00
Homo sapiens
NNVYCACGTGACHNNN
NNNDGTCACGTGRBNN
ChIP-seq
Mathelier et al.(2014)
MA0526.2
0.846
0.907
USF2
M07785_2.00
Homo sapiens
NGTCACGTGRBSVVV
BBBSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford
0.846
0.907
USF2
M07786_2.00
Homo sapiens
NVGTCACGTGRBSVVV
BBBSVYCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford
0.846
0.907
USF2
M07787_2.00
Homo sapiens
RGTCACGTGVB
VBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford
0.846
0.907
USF2
M07788_2.00
Homo sapiens
NGTCACGTGRBSV
BSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford
0.846
0.907
USF2
M07789_2.00
Homo sapiens
RGTCACGTGRBSV
BSVYCACGTGACY
ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford
0.846
0.907
USF2
M08715_2.00
Homo sapiens
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A
0.846
0.907
Usf2
M08777_2.00
Mus musculus
NVGTCACGTGVBSVNNVNB
VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A
0.846
0.907
Usf2
M09479_2.00
Mus musculus
NNCAYGTGVY
RBCACRTGNN
Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030
0.846
0.907
USF2
M09812_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_01
0.846
0.907
USF2
M09813_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_02
0.846
0.907
USF2
M09814_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6_01
0.846
0.907
USF2
M09815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6
0.846
0.907
USF2
M04077_2.00
Homo sapiens
VNCAYGTGACN
NGTCACRTGNB
SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX
0.846
0.907
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSONIP00000020599
bHLH
208
263
RRAQHNEVERRRRDKINNWIVTLSKIIPDCSMDSTKTGASKGGILSKACDYIRELR
ENSONIP00000020600
bHLH
236
291
RRAQHNEVERRRRDKINNWIVTLSKIIPDCSMDSTKTGASKGGILSKACDYIRELR
Links
Other
bHLH
family TFs
Other
Oreochromis niloticus
TFs
99 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSLACG00000001157
Latimeria chalumnae
ENSLACG00000001157
I
0.876
ENSONIG00000013775
Oreochromis niloticus
ENSONIG00000013775
N
0.876
usf2
Gasterosteus aculeatus
ENSGACG00000002481
N
0.876
USF1
Ochotona princeps
ENSOPRG00000003858
I
0.874
ENSPSIG00000008116
Pelodiscus sinensis
ENSPSIG00000008116
I
0.874
ENSPPYG00000000619
Pongo abelii
ENSPPYG00000000619
I
0.874
ENSPANG00000016141
Papio anubis
ENSPANG00000016141
I
0.874
ENSOGAG00000006705
Otolemur garnettii
ENSOGAG00000006705
I
0.874
USF1
Oryctolagus cuniculus
ENSOCUG00000002352
I
0.874
USF1
Macaca mulatta
ENSMMUG00000002003
I
0.874
USF1
Myotis lucifugus
ENSMLUG00000009179
I
0.874
USF1
Monodelphis domestica
ENSMODG00000005443
I
0.874
Usf1
Mus musculus
ENSMUSG00000026641
D
0.874
ENSOARG00000009376
Ovis aries
ENSOARG00000009376
I
0.874
ENSNLEG00000013935
Nomascus leucogenys
ENSNLEG00000013935
I
0.874
USF1
Pan troglodytes
ENSPTRG00000001565
I
0.874
USF1
Pteropus vampyrus
ENSPVAG00000005489
I
0.874
Ogr08237
Ophisaurus gracilis
Ogr08237
I
0.874
ENSP00000357000-D1
Bos grunniens
ENSP00000357000-D1
I
0.874
ENSMMUP00000002682
Macaca fascicularis
ENSMMUP00000002682
I
0.874
Pvit_07548
Pogona vitticeps
Pvit_07548
I
0.874
B39674
Xenopus laevis
B39674
I
0.874
usf1.S
Xenopus laevis
XB-GENE-6255904
I
0.874
usf1
Xenopus tropicalis
XB-GENE-5918718
I
0.874
Alligator_sinensis_CCG013447.1
Alligator sinensis
Alligator_sinensis_CCG013447.1
I
0.874
USF1
Vicugna pacos
ENSVPAG00000008421
I
0.874
ENSSHAG00000016124
Sarcophilus harrisii
ENSSHAG00000016124
I
0.874
Usf1
Rattus norvegicus
ENSRNOG00000004255
I
0.874
USF1
Sus scrofa
ENSSSCG00000006371
I
0.874
ENSSTOG00000012364
Ictidomys tridecemlineatus
ENSSTOG00000012364
I
0.874
USF1
Tursiops truncatus
ENSTTRG00000009151
I
0.874
USF1
Tupaia belangeri
ENSTBEG00000003164
I
0.874
USF1
Microcebus murinus
ENSMICG00000007199
I
0.874
ENSOARG00000003162
Ovis aries
ENSOARG00000003162
I
0.874
USF1
Choloepus hoffmanni
ENSCHOG00000011010
I
0.874
USF1
Canis familiaris
ENSCAFG00000012689
I
0.874
USF1
Equus caballus
ENSECAG00000004755
I
0.874
USF1
Gorilla gorilla
ENSGGOG00000003935
I
0.874
USF1
Homo sapiens
ENSG00000158773
D
0.874
USF1
Felis catus
ENSFCAG00000012307
I
0.874
USF1
Cavia porcellus
ENSCPOG00000003957
I
0.874
USF1
Callithrix jacchus
ENSCJAG00000005396
I
0.874
USF1
Loxodonta africana
ENSLAFG00000011338
I
0.874
ENSCSAG00000002622
Chlorocebus sabaeus
ENSCSAG00000002622
I
0.874
ENSAMEG00000015606
Ailuropoda melanoleuca
ENSAMEG00000015606
I
0.874
ENSMEUG00000009683
Macropus eugenii
ENSMEUG00000009683
I
0.874
ARHGAP30
Dasypus novemcinctus
ENSDNOG00000005811
I
0.874
USF1
Bos taurus
ENSBTAG00000017873
I
0.874
ENSAMXG00000009564
Astyanax mexicanus
ENSAMXG00000009564
I
0.871
ENSXMAG00000006484
Xiphophorus maculatus
ENSXMAG00000006484
I
0.871
ENSMPUG00000014181
Mustela putorius furo
ENSMPUG00000014181
I
0.871
USF2
Oryzias latipes
ENSORLG00000015114
I
0.871
ENSPFOG00000005160
Poecilia formosa
ENSPFOG00000005160
I
0.871
usf2
Danio rerio
ENSDARG00000020228
I
0.871
USF2
Takifugu rubripes
ENSTRUG00000005182
I
0.871
ENSLOCG00000000641
Lepisosteus oculatus
ENSLOCG00000000641
I
0.858
PHUM287950
Pediculus humanus
PHUM287950
I
0.854
ENSCSAG00000004521
Chlorocebus sabaeus
ENSCSAG00000004521
I
0.846
USF2
Cavia porcellus
ENSCPOG00000012147
I
0.846
ENSSTOG00000022219
Ictidomys tridecemlineatus
ENSSTOG00000022219
I
0.846
USF2
Sus scrofa
ENSSSCG00000002885
I
0.846
Alligator_sinensis_CCG004656.1
Alligator sinensis
Alligator_sinensis_CCG004656.1
I
0.846
USF2
Bos taurus
ENSBTAG00000017035
I
0.846
Pvit_11612
Pogona vitticeps
Pvit_11612
I
0.846
ENSAMEG00000000235
Ailuropoda melanoleuca
ENSAMEG00000000235
I
0.846
Ogr06118
Ophisaurus gracilis
Ogr06118
I
0.846
Myotis_brandtii_Usf2_10035177
Myotis brandtii
Myotis_brandtii_Usf2_10035177
I
0.846
Cmyd_10000422
Chelonia mydas
Cmyd_10000422
I
0.846
ENSP00000222305-D1
Bos grunniens
ENSP00000222305-D1
I
0.846
USF2
Canis familiaris
ENSCAFG00000007054
I
0.846
Usf2
Rattus norvegicus
ENSRNOG00000053725
I
0.846
USF2
Equus caballus
ENSECAG00000008583
I
0.846
ENSLACG00000003269
Latimeria chalumnae
ENSLACG00000003269
I
0.846
ENSNLEG00000011114
Nomascus leucogenys
ENSNLEG00000011114
I
0.846
USF2
Anolis carolinensis
ENSACAG00000010293
I
0.846
ENSOARG00000004745
Ovis aries
ENSOARG00000004745
I
0.846
ENSGMOG00000013274
Gadus morhua
ENSGMOG00000013274
I
0.846
Usf2
Mus musculus
ENSMUSG00000058239
D
0.846
ENSMPUG00000007099
Mustela putorius furo
ENSMPUG00000007099
I
0.846
ENSMLUG00000028063
Myotis lucifugus
ENSMLUG00000028063
I
0.846
ENSLOCG00000005321
Lepisosteus oculatus
ENSLOCG00000005321
I
0.846
USF2
Macaca mulatta
ENSMMUG00000011291
I
0.846
USF2
Loxodonta africana
ENSLAFG00000029360
I
0.846
USF2
Monodelphis domestica
ENSMODG00000013843
I
0.846
ENSGMOG00000009783
Gadus morhua
ENSGMOG00000009783
I
0.846
USF2
Oryctolagus cuniculus
ENSOCUG00000026259
I
0.846
USF2
Microcebus murinus
ENSMICG00000001519
I
0.846
ENSPPYG00000009855
Pongo abelii
ENSPPYG00000009855
I
0.846
ENSPSIG00000008600
Pelodiscus sinensis
ENSPSIG00000008600
I
0.846
USF2
Pan troglodytes
ENSPTRG00000010836
I
0.846
USF2
Pteropus vampyrus
ENSPVAG00000004161
I
0.846
USF2
Felis catus
ENSFCAG00000008894
I
0.846
USF2
Procavia capensis
ENSPCAG00000013941
I
0.846
USF2
Otolemur garnettii
ENSOGAG00000001476
I
0.846
USF2
Gasterosteus aculeatus
ENSGACG00000012475
I
0.846
USF2
Homo sapiens
ENSG00000105698
D
0.846
ENSPANG00000011040
Papio anubis
ENSPANG00000011040
I
0.846
USF2
Dasypus novemcinctus
ENSDNOG00000003072
I
0.846