USF1 (Pan troglodytes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSPTRG00000001565 T036998_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Usf1
M01732_2.00
Mus musculus
NRYCACGTGNN

NNCACGTGRYN
PBM
Weirauch et al.(2014)
pTH4376
0.914 1.000
USF1
M02792_2.00
Homo sapiens
RNCACGTGRY

RYCACGTGNY
SELEX
Jolma et al.(2013)
USF1_1
0.914 1.000
USF1
M04146_2.00
Homo sapiens
NVCACGTGVCN

NGBCACGTGBN
SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX
0.914 1.000
USF1
M08056_2.00
Homo sapiens
RGTCACRTGVB

VBCAYGTGACY
ChIP-seq
Mathelier et al.(2014)
MA0093.2
0.914 1.000
USF1
M07807_2.00
Homo sapiens
VGTCACGTGRBSVVV

BBBSVYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha
0.914 1.000
USF1
M07808_2.00
Homo sapiens
VVGTCACGTGVBSVS

SBSVBCACGTGACBB
ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha
0.914 1.000
USF1
M07809_2.00
Homo sapiens
RGTCACGTGVBSVNN

NNBSVBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha
0.914 1.000
USF1
M07810_2.00
Homo sapiens
VGTCACGTGRB

VYCACGTGACB
ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha
0.914 1.000
USF1
M07811_2.00
Homo sapiens
NVGTCACGTGVSSV

BSSBCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha
0.914 1.000
USF1
M08733_2.00
Homo sapiens
VGTCACGTGVBS

SVBCACGTGACB
Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A
0.914 1.000
Usf1
M08756_2.00
Mus musculus
NNGTCACGTGVBS

SVBCACGTGACNN
Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A
0.914 1.000
USF1
M09460_2.00
Homo sapiens
YCACGTGRBN

NVYCACGTGR
Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465
0.914 1.000
USF1
M09867_2.00
Homo sapiens
NNRYCACGTGRYNN

NNRYCACGTGRYNN
Transfac
Matys et al.(2006)
V$USF_01
0.914 1.000
USF1
M09868_2.00
Homo sapiens
NNRNCAYRTGNYNN

NNRNCAYRTGNYNN
Transfac
Matys et al.(2006)
V$USF_02
0.914 1.000
USF1
M09869_2.00
Homo sapiens
HCACGTGH

DCACGTGD
Transfac
Matys et al.(2006)
V$USF_C
0.914 1.000
USF1
M04147_2.00
Homo sapiens
VHCAYGTGAYN

NRTCACRTGDB
SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX
0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000002628 bHLH 200 255

Links

Other bHLH family TFs
Other Pan troglodytes TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Msc Mus musculus ENSMUSG00000025930 D 0.000
MSC Homo sapiens ENSG00000178860 D 0.000
TCF21 Homo sapiens ENSG00000118526 D 0.000
Tcf21 Mus musculus ENSMUSG00000045680 D 0.000
SPU_012008 Strongylocentrotus purpuratus SPU_012008 I 0.000
TCF21 Vicugna pacos ENSVPAG00000006271 I 0.000
MSC Vicugna pacos ENSVPAG00000000378 I 0.000
MSC Tursiops truncatus ENSTTRG00000017260 I 0.000
TCF21 Tursiops truncatus ENSTTRG00000009645 I 0.000
msc Takifugu rubripes ENSTRUG00000012425 I 0.000
tcf21 Takifugu rubripes ENSTRUG00000003919 I 0.000
ENSXMAG00000004322 Xiphophorus maculatus ENSXMAG00000004322 I 0.000
ENSXMAG00000010332 Xiphophorus maculatus ENSXMAG00000010332 I 0.000
SMAR006929 Strigamia maritima SMAR006929 I 0.000
SINV12414 Solenopsis invicta SINV12414 I 0.000
PHUM294350 Pediculus humanus PHUM294350 I 0.000
LotgiG99224 Lottia gigantea LotgiG99224 I 0.000
L798_06836 Zootermopsis nevadensis L798_06836 I 0.000
KGM_20305 Danaus plexippus KGM_20305 I 0.000
ISCW019706 Ixodes scapularis ISCW019706 I 0.000
GB42177 Apis mellifera GB42177 I 0.000
tcf21 Tetraodon nigroviridis ENSTNIG00000016326 I 0.000
msc Tetraodon nigroviridis ENSTNIG00000008188 I 0.000
Msc Rattus norvegicus ENSRNOG00000007540 I 0.000
TCF21 Pteropus vampyrus ENSPVAG00000009085 I 0.000
MSC Pteropus vampyrus ENSPVAG00000009083 I 0.000
MSC Pan troglodytes ENSPTRG00000020339 I 0.000
TCF21 Pan troglodytes ENSPTRG00000018622 I 0.000
ENSPSIG00000003604 Pelodiscus sinensis ENSPSIG00000003604 I 0.000
ENSPPYG00000018665 Pongo abelii ENSPPYG00000018665 I 0.000
ENSPPYG00000017022 Pongo abelii ENSPPYG00000017022 I 0.000
Tcf21 Rattus norvegicus ENSRNOG00000016700 I 0.000
ENSSHAG00000002801 Sarcophilus harrisii ENSSHAG00000002801 I 0.000
TCF21 Taeniopygia guttata ENSTGUG00000011548 I 0.000
MSC Taeniopygia guttata ENSTGUG00000011502 I 0.000
MSC Tupaia belangeri ENSTBEG00000014659 I 0.000
ENSSTOG00000024832 Ictidomys tridecemlineatus ENSSTOG00000024832 I 0.000
ENSSTOG00000023733 Ictidomys tridecemlineatus ENSSTOG00000023733 I 0.000
MSC Sus scrofa ENSSSCG00000006187 I 0.000
ENSSSCG00000004174 Sus scrofa ENSSSCG00000004174 I 0.000
ENSSHAG00000004870 Sarcophilus harrisii ENSSHAG00000004870 I 0.000
ENSPMAG00000000379 Petromyzon marinus ENSPMAG00000000379 I 0.000
TC002349 Tribolium castaneum TC002349 I 0.000
ACUA017871 Anopheles culicifacies ACUA017871 I 0.000
ACOM025280 Anopheles coluzzii ACOM025280 I 0.000
ACHR000018 Anopheles christyi ACHR000018 I 0.000
AATE012411 Anopheles atroparvus AATE012411 I 0.000
AARA007787 Anopheles arabiensis AARA007787 I 0.000
AALB007822 Anopheles albimanus AALB007822 I 0.000
AALB007560 Anopheles albimanus AALB007560 I 0.000
msc Xenopus tropicalis XB-GENE-978233 I 0.000
ADIR008037 Anopheles dirus ADIR008037 I 0.000
AEPI000467 Anopheles epiroticus AEPI000467 I 0.000
LLOJ001927 Lutzomyia longipalpis LLOJ001927 I 0.000
BGLB011346 Biomphalaria glabrata BGLB011346 I 0.000
ASTEI06898 Anopheles stephensi ASTEI06898 I 0.000
AMIN011264 Anopheles minimus AMIN011264 I 0.000
AMEM011707 Anopheles merus AMEM011707 I 0.000
AMEC000644 Anopheles melas AMEC000644 I 0.000
AMAM016192 Anopheles maculatus AMAM016192 I 0.000
AFUN008043 Anopheles funestus AFUN008043 I 0.000
tcf21.L Xenopus laevis XB-GENE-484809 I 0.000
tcf21 Xenopus tropicalis XB-GENE-484805 I 0.000
ENSP00000321445 Macaca fascicularis ENSP00000321445 I 0.000
ENSBTAP00000052463-D1 Bos grunniens ENSBTAP00000052463-D1 I 0.000
ENSBTAP00000044112-D1 Bos grunniens ENSBTAP00000044112-D1 I 0.000
Cflo_04912--XP_001121050.1_APIME Camponotus floridanus Cflo_04912--XP_001121050.1_APIME I 0.000
Brh_R005605 Buceros rhinoceros Brh_R005605 I 0.000
Alligator_sinensis_CCG001917.1 Alligator sinensis Alligator_sinensis_CCG001917.1 I 0.000
Afo_R014913 Aptenodytes forsteri Afo_R014913 I 0.000
Aan_R009769 Calypte anna Aan_R009769 I 0.000
ENSP00000356857 Macaca fascicularis ENSP00000356857 I 0.000
Gfo_R006439 Geospiza fortis Gfo_R006439 I 0.000
LDEC005027 Leptinotarsa decemlineata LDEC005027 I 0.000
CLEC012607 Cimex lectularius CLEC012607 I 0.000
Sakowv30031408m.g Saccoglossus kowalevskii Sakowv30031408m.g I 0.000
gw.912.11.1 Branchiostoma floridae gw.912.11.1 I 0.000
fgenesh2_pg.scaffold_201000028 Branchiostoma floridae fgenesh2_pg.scaffold_201000028 I 0.000
Ogr02938 Ophisaurus gracilis Ogr02938 I 0.000
Myotis_brandtii_TCF21_10035690 Myotis brandtii Myotis_brandtii_TCF21_10035690 I 0.000
Hsal_01862--XP_001122645.1_APIME Harpegnathos saltator Hsal_01862--XP_001122645.1_APIME I 0.000
PPAI008462 Phlebotomus papatasi PPAI008462 I 0.000
ENSPFOG00000020725 Poecilia formosa ENSPFOG00000020725 I 0.000
CpipJ_CPIJ016930 Culex pipiens CpipJ_CPIJ016930 I 0.000
MSC Callithrix jacchus ENSCJAG00000007766 I 0.000
ENSCPOG00000004726 Cavia porcellus ENSCPOG00000004726 I 0.000
TCF21 Cavia porcellus ENSCPOG00000024201 I 0.000
ENSCSAG00000013709 Chlorocebus sabaeus ENSCSAG00000013709 I 0.000
ENSCSAG00000016705 Chlorocebus sabaeus ENSCSAG00000016705 I 0.000
tcf21 Danio rerio ENSDARG00000036869 I 0.000
msc Danio rerio ENSDARG00000045353 I 0.000
MSC Dasypus novemcinctus ENSDNOG00000019019 I 0.000
TCF21 Dasypus novemcinctus ENSDNOG00000042846 I 0.000
TCF21 Equus caballus ENSECAG00000019197 I 0.000
MSC Erinaceus europaeus ENSEEUG00000005021 I 0.000
TCF21 Echinops telfairi ENSETEG00000012492 I 0.000
ENSFALG00000008455 Ficedula albicollis ENSFALG00000008455 I 0.000
ENSFALG00000011861 Ficedula albicollis ENSFALG00000011861 I 0.000
TCF21 Felis catus ENSFCAG00000031261 I 0.000
msc Gasterosteus aculeatus ENSGACG00000002802 I 0.000
tcf21 Gasterosteus aculeatus ENSGACG00000010957 I 0.000
TCF21 Callithrix jacchus ENSCJAG00000002811 I 0.000
MSC Canis familiaris ENSCAFG00000007923 I 0.000
TCF21 Canis familiaris ENSCAFG00000000205 I 0.000
AAEL010031 Aedes aegypti AAEL010031 I 0.000
ACEP13483 Atta cephalotes ACEP13483 I 0.000
ACYPI002601 Acyrthosiphon pisum ACYPI002601 I 0.000
AGAP007124 Anopheles gambiae AGAP007124 I 0.000
BGIBMGA012033 Bombyx mori BGIBMGA012033 I 0.000
CapteG80741 Capitella teleta CapteG80741 I 0.000
CGI_10026944 Crassostrea gigas CGI_10026944 I 0.000
CPIJ016930 Culex quinquefasciatus CPIJ016930 I 0.000
DAPPUDRAFT_37461 Daphnia pulex DAPPUDRAFT_37461 I 0.000
TCF21 Anolis carolinensis ENSACAG00000010325 I 0.000
MSC Anolis carolinensis ENSACAG00000014585 I 0.000
ENSAMEG00000005942 Ailuropoda melanoleuca ENSAMEG00000005942 I 0.000
ENSAMEG00000015953 Ailuropoda melanoleuca ENSAMEG00000015953 I 0.000
ENSAMXG00000004351 Astyanax mexicanus ENSAMXG00000004351 I 0.000
ENSAPLG00000008024 Anas platyrhynchos ENSAPLG00000008024 I 0.000
MSC Bos taurus ENSBTAG00000005404 I 0.000
TCF21 Bos taurus ENSBTAG00000021827 I 0.000
MSC Equus caballus ENSECAG00000008333 I 0.000
ENSGALG00000019470 Gallus gallus ENSGALG00000019470 I 0.000
TCF21 Oryctolagus cuniculus ENSOCUG00000017761 I 0.000
MSC Oryctolagus cuniculus ENSOCUG00000007208 I 0.000
ENSOARG00000014623 Ovis aries ENSOARG00000014623 I 0.000
ENSOARG00000004844 Ovis aries ENSOARG00000004844 I 0.000
TCF21 Ornithorhynchus anatinus ENSOANG00000013098 I 0.000
ENSNLEG00000014647 Nomascus leucogenys ENSNLEG00000014647 I 0.000
ENSNLEG00000011452 Nomascus leucogenys ENSNLEG00000011452 I 0.000
ENSMPUG00000014798 Mustela putorius furo ENSMPUG00000014798 I 0.000
MSC Otolemur garnettii ENSOGAG00000013827 I 0.000
TCF21 Otolemur garnettii ENSOGAG00000034073 I 0.000
ENSPCAG00000006459 Procavia capensis ENSPCAG00000006459 I 0.000
MSC Procavia capensis ENSPCAG00000004330 I 0.000
ENSPANG00000024238 Papio anubis ENSPANG00000024238 I 0.000
ENSPANG00000022301 Papio anubis ENSPANG00000022301 I 0.000
tcf21 Oryzias latipes ENSORLG00000016491 I 0.000
msc Oryzias latipes ENSORLG00000008030 I 0.000
ENSONIG00000014278 Oreochromis niloticus ENSONIG00000014278 I 0.000
ENSONIG00000000446 Oreochromis niloticus ENSONIG00000000446 I 0.000
ENSMPUG00000010593 Mustela putorius furo ENSMPUG00000010593 I 0.000
TCF21 Monodelphis domestica ENSMODG00000017516 I 0.000
ENSLOCG00000003912 Lepisosteus oculatus ENSLOCG00000003912 I 0.000
TCF21 Loxodonta africana ENSLAFG00000009507 I 0.000
MSC Loxodonta africana ENSLAFG00000002649 I 0.000
ENSLACG00000005024 Latimeria chalumnae ENSLACG00000005024 I 0.000
ENSGMOG00000019481 Gadus morhua ENSGMOG00000019481 I 0.000
MSC Gorilla gorilla ENSGGOG00000009955 I 0.000
TCF21 Gorilla gorilla ENSGGOG00000005460 I 0.000
TCF21 Gallus gallus ENSGALG00000029024 I 0.000
ENSPFOG00000010821 Poecilia formosa ENSPFOG00000010821 I 0.000
ENSLOCG00000016232 Lepisosteus oculatus ENSLOCG00000016232 I 0.000
MSC Monodelphis domestica ENSMODG00000007225 I 0.000
TCF21 Macaca mulatta ENSMMUG00000002871 I 0.000
MSC Macaca mulatta ENSMMUG00000000947 I 0.000
TCF21 Myotis lucifugus ENSMLUG00000009194 I 0.000
MSC Myotis lucifugus ENSMLUG00000008572 I 0.000
ENSMICG00000014144 Microcebus murinus ENSMICG00000014144 I 0.000
TCF21 Meleagris gallopavo ENSMGAG00000013117 I 0.000
ENSMEUG00000005491 Macropus eugenii ENSMEUG00000005491 I 0.000
tetur13g02170 Tetranychus urticae tetur13g02170 N 0.000