CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Clock
(
Rattus norvegicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSRNOG00000002175
T037165_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
The protein encoded by this gene plays a central role in the regulation of circadian rhythms. The protein encodes a transcription factor of the basic helix-loop-helix (bHLH) family and contains DNA binding histone acetyltransferase activity. The encoded protein forms a heterodimer with Arntl (Bmal1) that binds E-box enhancer elements upstream of Period (Per1, Per2, Per3) and Cryptochrome (Cry1, Cry2) genes and activates transcription of these genes. Per and Cry proteins heterodimerize and repress their own transcription by interacting in a feedback loop with Clock/Arntl complexes. Polymorphisms in this gene may be associated with behavioral changes, obesity, and metabolic syndrome. Two transcripts encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2014]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN
NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.914
1.000
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH
DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.914
1.000
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN
NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.914
1.000
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.914
1.000
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.914
1.000
Clock
M09473_2.00
Mus musculus
CACGTGNN
NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.914
1.000
CLOCK
M09849_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.914
1.000
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH
DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.914
1.000
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000002976
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
ENSRNOP00000002981
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
ENSRNOP00000074670
bHLH
35
85
KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHK
Links
Other
bHLH
family TFs
Other
Rattus norvegicus
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy