CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ascl1
(
Rattus norvegicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSRNOG00000004294
T037173_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables double-stranded DNA binding activity and identical protein binding activity. Involved in several processes, including cellular response to magnetism; regulation of neuron differentiation; and response to epidermal growth factor. Predicted to be located in neuronal cell body and nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Biomarker of status epilepticus. Orthologous to human ASCL1 (achaete-scute family bHLH transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ASCL1
M04135_2.00
Homo sapiens
NRCASSTGYN
NRCASSTGYN
SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX
0.914
1.000
ASCL1
M08055_2.00
Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN
ChIP-seq
Mathelier et al.(2014)
MA1100.1
0.914
1.000
ASCL1
M08730_2.00
Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN
Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A
0.914
1.000
Ascl1
M08748_2.00
Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV
Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A
0.914
1.000
Ascl1
M09464_2.00
Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN
Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840
0.914
1.000
ASCL1
M09855_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6_01
0.914
1.000
ASCL1
M09856_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6_02
0.914
1.000
ASCL1
M09857_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6
0.914
1.000
ASCL1
M04136_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX
0.914
1.000
Ascl2
M00117_2.00
Mus musculus
NVCABVTGBN
NVCABVTGBN
PBM
Badis et al.(2009)
Ascl2_2654
0.871
0.880
Ascl2
M02814_2.00
Mus musculus
RRCAGCTGYY
RRCAGCTGYY
SELEX
Jolma et al.(2013)
Ascl2_1
0.871
0.880
Ascl2
M08744_2.00
Mus musculus
RGCAGSTGB
VCASCTGCY
Misc
Kulakovskiy et al.(2013)
ASCL2_MOUSE.H11MO.0.C
0.871
0.880
ASCL2
M04207_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_eDBD_HT-SELEX
0.871
0.860
ASCL2
M04209_2.00
Homo sapiens
VCACRACGCD
HGCGTYGTGB
SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_1
0.871
0.860
ASCL2
M04210_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_2
0.871
0.860
ASCL2
M04208_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_eDBD_Methyl-HT-SELEX
0.871
0.860
ASCL2
M04211_2.00
Homo sapiens
VRCAGCTGYB
VRCAGCTGYB
SELEX
Yin et al.(2017)
ASCL2_FL_Methyl-HT-SELEX
0.871
0.860
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000005674
bHLH
118
168
ARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQ
Links
Other
bHLH
family TFs
Other
Rattus norvegicus
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ASCL1
Oryctolagus cuniculus
ENSOCUG00000006992
I
0.914
ASCL1
Otolemur garnettii
ENSOGAG00000030324
I
0.914
ENSPPYG00000004884
Pongo abelii
ENSPPYG00000004884
I
0.914
ASCL1
Pteropus vampyrus
ENSPVAG00000011272
I
0.914
ENSOARG00000015879
Ovis aries
ENSOARG00000015879
I
0.914
ASCL1
Ornithorhynchus anatinus
ENSOANG00000013973
I
0.914
ENSMEUG00000010370
Macropus eugenii
ENSMEUG00000010370
I
0.914
ASCL1
Macaca mulatta
ENSMMUG00000005747
I
0.914
ASCL1
Monodelphis domestica
ENSMODG00000002347
I
0.914
Ascl1
Mus musculus
ENSMUSG00000020052
D
0.914
ENSSHAG00000011936
Sarcophilus harrisii
ENSSHAG00000011936
I
0.914
ENSSTOG00000028420
Ictidomys tridecemlineatus
ENSSTOG00000028420
I
0.914
Pvit_15764
Pogona vitticeps
Pvit_15764
I
0.914
ascl1
Xenopus tropicalis
XB-GENE-1032967
I
0.914
ascl1.L
Xenopus laevis
XB-GENE-1032969
I
0.914
ascl1.S
Xenopus laevis
XB-GENE-17340658
I
0.914
Ogr07565
Ophisaurus gracilis
Ogr07565
I
0.914
ENSP00000266744
Macaca fascicularis
ENSP00000266744
I
0.914
ASCL1
Tursiops truncatus
ENSTTRG00000016243
I
0.914
ASCL1
Vicugna pacos
ENSVPAG00000002018
I
0.914
ENSBTAP00000021592-D1
Bos grunniens
ENSBTAP00000021592-D1
I
0.914
ASCL1
Gorilla gorilla
ENSGGOG00000005479
I
0.914
ENSNLEG00000006410
Nomascus leucogenys
ENSNLEG00000006410
I
0.914
ASCL1
Felis catus
ENSFCAG00000008250
I
0.914
ASCL1
Callithrix jacchus
ENSCJAG00000014345
I
0.914
ASCL1
Dasypus novemcinctus
ENSDNOG00000001616
I
0.914
ASCL1
Cavia porcellus
ENSCPOG00000020666
I
0.914
ENSCSAG00000018938
Chlorocebus sabaeus
ENSCSAG00000018938
I
0.914
ASCL1
Canis familiaris
ENSCAFG00000007324
I
0.914
ENSAMEG00000006449
Ailuropoda melanoleuca
ENSAMEG00000006449
I
0.914
ASCL1
Bos taurus
ENSBTAG00000016227
I
0.914
ASCL1
Homo sapiens
ENSG00000139352
D
0.914
ENSLACG00000010712
Latimeria chalumnae
ENSLACG00000010712
I
0.894
ENSONIG00000021219
Oreochromis niloticus
ENSONIG00000021219
I
0.894
ascl1a
Gasterosteus aculeatus
ENSGACG00000020048
I
0.894
ascl1a
Danio rerio
ENSDARG00000038386
I
0.894
ENSGMOG00000002268
Gadus morhua
ENSGMOG00000002268
I
0.894
ENSPFOG00000018073
Poecilia formosa
ENSPFOG00000018073
I
0.894
ENSXMAG00000019614
Xiphophorus maculatus
ENSXMAG00000019614
I
0.894
ascl1a
Takifugu rubripes
ENSTRUG00000012801
I
0.894
ascl1a
Oryzias latipes
ENSORLG00000016504
I
0.894
ENSLACG00000001911
Latimeria chalumnae
ENSLACG00000001911
I
0.886
SMAR011494
Strigamia maritima
SMAR011494
I
0.886
ASCL2
Procavia capensis
ENSPCAG00000000676
I
0.871
ENSCPOG00000023523
Cavia porcellus
ENSCPOG00000023523
I
0.871
ENSPPYG00000002926
Pongo abelii
ENSPPYG00000002926
I
0.871
ASCL2
Callithrix jacchus
ENSCJAG00000011549
I
0.871
ASCL2
Canis familiaris
ENSCAFG00000010103
I
0.871
ASCL2
Bos taurus
ENSBTAG00000026769
I
0.871
ASCL2
Homo sapiens
ENSG00000183734
D
0.871
ENSSTOG00000028167
Ictidomys tridecemlineatus
ENSSTOG00000028167
I
0.871
ASCL2
Pteropus vampyrus
ENSPVAG00000002964
I
0.871
Ascl2
Rattus norvegicus
ENSRNOG00000020434
I
0.871
ASCL2
Pan troglodytes
ENSPTRG00000003174
I
0.871
ENSPANG00000019205
Papio anubis
ENSPANG00000019205
I
0.871
Ascl2
Mus musculus
ENSMUSG00000009248
D
0.871
ENSNLEG00000002663
Nomascus leucogenys
ENSNLEG00000002663
I
0.871
ENSMPUG00000019849
Mustela putorius furo
ENSMPUG00000019849
I
0.871
ASCL2
Felis catus
ENSFCAG00000018914
I
0.871
ASCL2
Gorilla gorilla
ENSGGOG00000007421
I
0.871
ASCL2
Loxodonta africana
ENSLAFG00000020947
I
0.871
ENSAMEG00000002164
Ailuropoda melanoleuca
ENSAMEG00000002164
I
0.871
ASCL2
Macaca mulatta
ENSMMUG00000001322
I
0.871
ASCL2
Ochotona princeps
ENSOPRG00000019165
I
0.871
ASCL2
Otolemur garnettii
ENSOGAG00000034847
I
0.871
ENSCSAG00000018956
Chlorocebus sabaeus
ENSCSAG00000018956
I
0.871
SPU_028148
Strongylocentrotus purpuratus
SPU_028148
I
0.864
Sakowv30008499m.g
Saccoglossus kowalevskii
Sakowv30008499m.g
I
0.864
ENSAMXG00000014210
Astyanax mexicanus
ENSAMXG00000014210
I
0.864
ENSFALG00000014466
Ficedula albicollis
ENSFALG00000014466
I
0.860
ASCL2
Taeniopygia guttata
ENSTGUG00000009283
I
0.860
ascl1b
Gasterosteus aculeatus
ENSGACG00000011375
I
0.859
ENSGMOG00000009589
Gadus morhua
ENSGMOG00000009589
I
0.859
ENSAMXG00000024858
Astyanax mexicanus
ENSAMXG00000024858
I
0.859
ENSXMAG00000019890
Xiphophorus maculatus
ENSXMAG00000019890
I
0.859
ascl1b
Danio rerio
ENSDARG00000101628
I
0.859
ascl1b
Oryzias latipes
ENSORLG00000012117
I
0.859
ascl1b
Takifugu rubripes
ENSTRUG00000011651
I
0.859
ascl1b
Tetraodon nigroviridis
ENSTNIG00000011380
I
0.859
ENSPFOG00000020633
Poecilia formosa
ENSPFOG00000020633
I
0.859
ENSLOCG00000017318
Lepisosteus oculatus
ENSLOCG00000017318
I
0.859
ENSONIG00000020440
Oreochromis niloticus
ENSONIG00000020440
I
0.859
ENSAMXG00000025568
Astyanax mexicanus
ENSAMXG00000025568
I
0.849
ENSGALG00000023607
Gallus gallus
ENSGALG00000023607
I
0.847
e_gw.302.11.1
Branchiostoma floridae
e_gw.302.11.1
I
0.842
e_gw.59.47.1
Branchiostoma floridae
e_gw.59.47.1
I
0.842
ENSAPLG00000001445
Anas platyrhynchos
ENSAPLG00000001445
I
0.666