CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Ascl1
(
Rattus norvegicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSRNOG00000004294
T037173_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables double-stranded DNA binding activity and identical protein binding activity. Involved in several processes, including cellular response to magnetism; regulation of neuron differentiation; and response to epidermal growth factor. Predicted to be located in neuronal cell body and nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Biomarker of status epilepticus. Orthologous to human ASCL1 (achaete-scute family bHLH transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ASCL1
M04135_2.00
Homo sapiens
NRCASSTGYN
NRCASSTGYN
SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX
0.914
1.000
ASCL1
M08055_2.00
Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN
ChIP-seq
Mathelier et al.(2014)
MA1100.1
0.914
1.000
ASCL1
M08730_2.00
Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN
Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A
0.914
1.000
Ascl1
M08748_2.00
Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV
Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A
0.914
1.000
Ascl1
M09464_2.00
Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN
Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840
0.914
1.000
ASCL1
M09855_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6_01
0.914
1.000
ASCL1
M09856_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6_02
0.914
1.000
ASCL1
M09857_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MASH1_Q6
0.914
1.000
ASCL1
M04136_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX
0.914
1.000
Ascl2
M00117_2.00
Mus musculus
NVCABVTGBN
NVCABVTGBN
PBM
Badis et al.(2009)
Ascl2_2654
0.871
0.880
Ascl2
M02814_2.00
Mus musculus
RRCAGCTGYY
RRCAGCTGYY
SELEX
Jolma et al.(2013)
Ascl2_1
0.871
0.880
Ascl2
M08744_2.00
Mus musculus
RGCAGSTGB
VCASCTGCY
Misc
Kulakovskiy et al.(2013)
ASCL2_MOUSE.H11MO.0.C
0.871
0.880
ASCL2
M04207_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_eDBD_HT-SELEX
0.871
0.860
ASCL2
M04209_2.00
Homo sapiens
VCACRACGCD
HGCGTYGTGB
SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_1
0.871
0.860
ASCL2
M04210_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_FL_HT-SELEX_2
0.871
0.860
ASCL2
M04208_2.00
Homo sapiens
NRCAGCTGYN
NRCAGCTGYN
SELEX
Yin et al.(2017)
ASCL2_eDBD_Methyl-HT-SELEX
0.871
0.860
ASCL2
M04211_2.00
Homo sapiens
VRCAGCTGYB
VRCAGCTGYB
SELEX
Yin et al.(2017)
ASCL2_FL_Methyl-HT-SELEX
0.871
0.860
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000005674
bHLH
118
168
ARRNERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAVEYIRALQ
Links
Other
bHLH
family TFs
Other
Rattus norvegicus
TFs
87 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy