Mitf (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000008658 T037188_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
basic helix-loop-helix-leucine zipper transcription factor; may play a role in osteoclast function [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Mitf
M01741_2.00
Mus musculus
NCDCGTGAYN

NRTCACGHGN
PBM
Weirauch et al.(2014)
pTH5465
0.914 1.000
MITF
M08058_2.00
Homo sapiens
NNNDRTCACGTGAYHNNN

NNNDRTCACGTGAYHNNN
ChIP-seq
Mathelier et al.(2014)
MA0620.2
0.914 1.000
MITF
M08740_2.00
Homo sapiens
YCAYGTGACH

DGTCACRTGR
Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A
0.914 1.000
Mitf
M08765_2.00
Mus musculus
BCHYGTGACY

RGTCACRDGV
Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A
0.914 1.000
Mitf
M09475_2.00
Mus musculus
GTCACRWGVB

VBCWYGTGAC
Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085
0.914 1.000
MITF
M09880_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q4
0.914 1.000
MITF
M09881_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q6
0.914 1.000
Tfe3
M01715_2.00
Mus musculus
NCDCRTGAYN

NRTCAYGHGN
PBM
Weirauch et al.(2014)
pTH5057
0.914 0.981
Tfe3
M05833_2.00
Mus musculus
CACGTGAY

RTCACGTG
SMiLE-seq
Isakova et al.(2017)
TFE3
0.914 0.981
Tfe3
M08743_2.00
Mus musculus
TCACGTGACH

DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A
0.914 0.981
Tfe3
M09884_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_01
0.914 0.981
TFE3
M02773_2.00
Homo sapiens
VNCACGTGMY

RKCACGTGNB
SELEX
Jolma et al.(2013)
TFE3_1
0.871 0.963
TFE3
M04058_2.00
Homo sapiens
YVCACGTGAYN

NRTCACGTGBR
SELEX
Yin et al.(2017)
TFE3_eDBD_HT-SELEX
0.871 0.963
TFE3
M08709_2.00
Homo sapiens
TCACGTGACH

DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_HUMAN.H11MO.0.B
0.871 0.963
TFE3
M09790_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_Q6
0.871 0.963
TFE3
M04059_2.00
Homo sapiens
NRTCACATGBB

VVCATGTGAYN
SELEX
Yin et al.(2017)
TFE3_eDBD_Methyl-HT-SELEX
0.871 0.963
Tfec
M00755_2.00
Mus musculus
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2013)
pTH2885
0.870 0.926
Tfec
M01736_2.00
Mus musculus
NCNCRTGVYN

NRBCAYGNGN
PBM
Weirauch et al.(2014)
pTH5065
0.870 0.926
TFEC
M02778_2.00
Homo sapiens
RNCACRTGAB

VTCAYGTGNY
SELEX
Jolma et al.(2013)
TFEC_1
0.870 0.907
TFEC
M04078_2.00
Homo sapiens
NVCACGTGACN

NGTCACGTGBN
SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX
0.870 0.907
TFEC
M04079_2.00
Homo sapiens
VNCATGTGAYN

NRTCACATGNB
SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX
0.870 0.907
Tfeb
M01728_2.00
Mus musculus
CWCGTGAY

RTCACGWG
PBM
Weirauch et al.(2014)
pTH5072
0.855 0.889
TFEB
M02781_2.00
Homo sapiens
RNCACGTGAY

RTCACGTGNY
SELEX
Jolma et al.(2013)
TFEB_1
0.855 0.889
TFEB
M02727_2.00
Homo sapiens
RTCACGTGAY

RTCACGTGAY
SELEX
Jolma et al.(2010)
TFEB_dimer
0.855 0.889
TFEB
M04088_2.00
Homo sapiens
YVCACGTGAYN

NRTCACGTGBR
SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX
0.855 0.889
TFEB
M08718_2.00
Homo sapiens
CACGTGAYY

RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C
0.855 0.889
Tfeb
M08753_2.00
Mus musculus
CACGTGAYY

RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C
0.855 0.889
TFEB
M04089_2.00
Homo sapiens
VNCATGTGAYN

NRTCACATGNB
SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX
0.855 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000044350 bHLH 312 365
ENSRNOP00000073565 bHLH 296 349

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

243 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_04600 Ancylostoma caninum ANCCAN_04600 I 0.000
ACAC_0000024001 Angiostrongylus cantonensis ACAC_0000024001 I 0.000
ASIM_0001001801 Anisakis simplex ASIM_0001001801 I 0.000
ALUE_0000773501 Ascaris lumbricoides ALUE_0000773501 I 0.000
ASU_04096 Ascaris suum ASU_04096 I 0.000
Bm4234 Brugia malayi Bm4234 N 0.000
BXY_1693900 Bursaphelenchus xylophilus BXY_1693900 I 0.000
CBN23380 Caenorhabditis brenneri CBN23380 I 0.000
CBG00680 Caenorhabditis briggsae CBG00680 I 0.000
efl-3 Caenorhabditis elegans WBGene00009899 I 0.000
CJA26768 Caenorhabditis japonica CJA26768 I 0.000
CRE01589 Caenorhabditis remanei CRE01589 I 0.000
CGOC_0000227901 Cylicostephanus goldi CGOC_0000227901 N 0.000
DICVIV_01764 Dictyocaulus viviparus DICVIV_01764 I 0.000
nDi.2.2.2.g08162 Dirofilaria immitis nDi.2.2.2.g08162 N 0.000
HCOI01892600 Haemonchus contortus HCOI01892600 I 0.000
HPBE_0000610601 Heligmosomoides bakeri HPBE_0000610601 I 0.000
nLs.2.1.2.g03748 Litomosoides sigmodontis nLs.2.1.2.g03748 N 0.000
LOAG_07147 Loa loa LOAG_07147 N 0.000
augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10944-processed-gene-0.0 I 0.000
maker-nMf.1.1.scaf01659-augustus-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf01659-augustus-gene-0.9 I 0.000
MhA1_Contig130.frz3.gene44 Meloidogyne hapla MhA1_Contig130.frz3.gene44 I 0.000
Minc04041 Meloidogyne incognita Minc04041 I 0.000
Minc05731 Meloidogyne incognita Minc05731 I 0.000
OESDEN_14635 Oesophagostomum dentatum OESDEN_14635 I 0.000
OESDEN_13289 Oesophagostomum dentatum OESDEN_13289 I 0.000
OFLC_0000212001 Onchocerca flexuosa OFLC_0000212001 N 0.000
nOo.2.0.1.g06441 Onchocerca ochengi nOo.2.0.1.g06441 N 0.000
WBGene00247952 Onchocerca volvulus WBGene00247952 N 0.000
scaffold884-EXSNAP2012.1 Pristionchus exspectatus scaffold884-EXSNAP2012.1 I 0.000
scaffold51-EXSNAP2012.35 Pristionchus exspectatus scaffold51-EXSNAP2012.35 I 0.000
PPA21298 Pristionchus pacificus PPA21298 I 0.000
L596_g12895 Steinernema carpocapsae L596_g12895 I 0.000
L889_g28422 Steinernema feltiae L889_g28422 I 0.000
L893_g19965 Steinernema glaseri L893_g19965 I 0.000
L898_g3621 Steinernema monticolum L898_g3621 I 0.000
L892_g1818 Steinernema scapterisci L892_g1818 I 0.000
SMUV_0000434101 Syphacia muris SMUV_0000434101 I 0.000
TELCIR_03927 Teladorsagia circumcincta TELCIR_03927 I 0.000
TCNE_0000873901 Toxocara canis TCNE_0000873901 I 0.000
WUBG_01805 Wuchereria bancrofti WUBG_01805 N 0.000