CIS-BP Database: Catalog of Inferred Sequence Binding Preferences - Update
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Myog
(
Rattus norvegicus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSRNOG00000030743
T037240_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
This gene belongs to the myogenic factor subfamily of the basic helix-loop-helix (BHLH) family of transcription factors. The protein encoded by this gene is a muscle-specific skeletal myogenin, which acts in concert with other family members to regulate myogenesis. The protein plays an essential role in the conversion of undifferentiated cells to myoblasts and functional skeletal muscle. [provided by RefSeq, Jul 2008]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYOG
M04098_2.00
Homo sapiens
BRACAGCTGWCR
YGWCAGCTGTYV
SELEX
Yin et al.(2017)
MYOG_eDBD_HT-SELEX_1
0.914
1.000
MYOG
M04099_2.00
Homo sapiens
NAACAGCTGTYN
NRACAGCTGTTN
SELEX
Yin et al.(2017)
MYOG_eDBD_HT-SELEX_2
0.914
1.000
MYOG
M04102_2.00
Homo sapiens
NRACARCTGWCR
YGWCAGYTGTYN
SELEX
Yin et al.(2017)
MYOG_FL_HT-SELEX_1
0.914
1.000
MYOG
M04103_2.00
Homo sapiens
NAACARYTGTYN
NRACARYTGTTN
SELEX
Yin et al.(2017)
MYOG_FL_HT-SELEX_2
0.914
1.000
Myog
M08061_2.00
Mus musculus
RRCAGCTGVNN
NNBCAGCTGYY
ChIP-seq
Mathelier et al.(2014)
MA0500.1
0.914
1.000
MYOG
M08721_2.00
Homo sapiens
BHVCAGCTGYYNB
VNRRCAGCTGBDV
Misc
Kulakovskiy et al.(2013)
MYOG_HUMAN.H11MO.0.B
0.914
1.000
Myog
M08755_2.00
Mus musculus
BHVCAGCTGYYNB
VNRRCAGCTGBDV
Misc
Kulakovskiy et al.(2013)
MYOG_MOUSE.H11MO.0.A
0.914
1.000
Myog
M09469_2.00
Mus musculus
RACAGCTG
CAGCTGTY
Misc
Heinz et al.(2010)
C2C12-MyoG_GSE36024
0.914
1.000
MYOG
M09829_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOGENIN_Q6_01
0.914
1.000
MYOG
M09830_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOGENIN_Q6
0.914
1.000
MYOG
M04100_2.00
Homo sapiens
BRACAGCTGTCR
YGACAGCTGTYV
SELEX
Yin et al.(2017)
MYOG_eDBD_Methyl-HT-SELEX_1
0.914
1.000
MYOG
M04101_2.00
Homo sapiens
BAACAGCTGTYV
BRACAGCTGTTV
SELEX
Yin et al.(2017)
MYOG_eDBD_Methyl-HT-SELEX_2
0.914
1.000
MYOG
M04104_2.00
Homo sapiens
BRACAGCTGTCR
YGACAGCTGTYV
SELEX
Yin et al.(2017)
MYOG_FL_Methyl-HT-SELEX_1
0.914
1.000
MYOG
M04105_2.00
Homo sapiens
NAACAGCTGTYN
NRACAGCTGTTN
SELEX
Yin et al.(2017)
MYOG_FL_Methyl-HT-SELEX_2
0.914
1.000
Myf6
M00120_2.00
Mus musculus
NCRNNTGNY
RNCANNYGN
PBM
Badis et al.(2009)
Myf6_3824
0.883
0.865
Myf6
M01742_2.00
Mus musculus
RACAGHTGH
DCADCTGTY
PBM
Weirauch et al.(2014)
pTH5099
0.883
0.865
MYF6
M02780_2.00
Homo sapiens
AACARCTGTY
RACAGYTGTT
SELEX
Jolma et al.(2013)
MYF6_1
0.883
0.865
MYF6
M04084_2.00
Homo sapiens
BRHCASSTGWCR
YGWCASSTGDYV
SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_1
0.883
0.865
MYF6
M04085_2.00
Homo sapiens
NRACASSTGWYV
BRWCASSTGTYN
SELEX
Yin et al.(2017)
MYF6_eDBD_HT-SELEX_2
0.883
0.865
MYF6
M05831_2.00
Homo sapiens
BRACAKNTGNY
RNCANMTGTYV
SMiLE-seq
Isakova et al.(2017)
MYF6
0.883
0.865
MYF6
M08717_2.00
Homo sapiens
CASCTGC
GCAGSTG
Misc
Kulakovskiy et al.(2013)
MYF6_HUMAN.H11MO.0.C
0.883
0.865
Myf6
M08767_2.00
Mus musculus
CASCTGC
GCAGSTG
Misc
Kulakovskiy et al.(2013)
MYF6_MOUSE.H11MO.0.C
0.883
0.865
MYF6
M09820_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MRF4_Q3
0.883
0.865
MYF6
M04086_2.00
Homo sapiens
BRHCASSTGWCR
YGWCASSTGDYV
SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_1
0.883
0.865
MYF6
M04087_2.00
Homo sapiens
BAACASSTGWYV
BRWCASSTGTTV
SELEX
Yin et al.(2017)
MYF6_eDBD_Methyl-HT-SELEX_2
0.883
0.865
Myf5
M09463_2.00
Mus musculus
NRRCAGCTGY
RCAGCTGYYN
Misc
Heinz et al.(2010)
GM-Myf5_GSE24852
0.842
0.788
MYF5
M09821_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYF5_Q6
0.842
0.788
MYOD1
M04116_2.00
Homo sapiens
BAACASSTGNYV
BRNCASSTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_1
0.839
0.788
MYOD1
M04117_2.00
Homo sapiens
BRVCASMTGDCG
CGHCAKSTGBYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_2
0.839
0.788
MYOD1
M04120_2.00
Homo sapiens
NAACASSTGNYV
BRNCASSTGTTN
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_1
0.839
0.788
MYOD1
M04121_2.00
Homo sapiens
BRMCASCTGDCR
YGHCAGSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_2
0.839
0.788
Myod1
M08060_2.00
Mus musculus
NVNRRCAGSTGBN
NVCASCTGYYNBN
ChIP-seq
Mathelier et al.(2014)
MA0499.1
0.839
0.788
MYOD1
M08724_2.00
Homo sapiens
NVNNRNRRCAGCTGN
NCAGCTGYYNYNNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_HUMAN.H11MO.0.A
0.839
0.788
Myod1
M08745_2.00
Mus musculus
NVNRRNRRCAGSTGB
VCASCTGYYNYYNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_MOUSE.H11MO.0.A
0.839
0.788
MYOD1
M09838_2.00
Homo sapiens
HRVCACCTGHBB
VVDCAGGTGBYD
Transfac
Matys et al.(2006)
V$MYOD_01
0.839
0.788
MYOD1
M09839_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOD_Q6_02
0.839
0.788
MYOD1
M09840_2.00
Homo sapiens
NVCABCTGNY
RNCAGVTGBN
Transfac
Matys et al.(2006)
V$MYOD_Q6
0.839
0.788
MYOD1
M04118_2.00
Homo sapiens
BAACANVTGTYV
BRACABNTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_1
0.839
0.788
MYOD1
M04119_2.00
Homo sapiens
BRRCASSTGDCR
YGHCASSTGYYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_2
0.839
0.788
MYOD1
M04122_2.00
Homo sapiens
NAMCASSTGBYV
BRVCASSTGKTN
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_1
0.839
0.788
MYOD1
M04123_2.00
Homo sapiens
BRMCASVTGNCR
YGNCABSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_2
0.839
0.788
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000039817
bHLH
82
133
RRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLPKVEILRSAIQYIERLQ
ENSRNOP00000073308
bHLH
82
133
RRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLPKVEILRSAIQYIERLQ
Links
Other
bHLH
family TFs
Other
Rattus norvegicus
TFs
274 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy