Usf2 (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000053725 T037252_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
ubiquitous transcription factor; may play a role in hormonal and dietary regulations [RGD, Feb 2006]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Usf2
M01752_2.00
Mus musculus
NNCACGTGAN

NTCACGTGNN
PBM
Weirauch et al.(2014)
pTH5265
0.914 1.000
Usf2
M08777_2.00
Mus musculus
NVGTCACGTGVBSVNNVNB

VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_MOUSE.H11MO.0.A
0.914 1.000
Usf2
M09479_2.00
Mus musculus
NNCAYGTGVY

RBCACRTGNN
Misc
Heinz et al.(2010)
C2C12-Usf2_GSE36030
0.914 1.000
USF2
M04076_2.00
Homo sapiens
NVCACGTGVCN

NGBCACGTGBN
SELEX
Yin et al.(2017)
USF2_eDBD_HT-SELEX
0.871 0.981
USF2
M08050_2.00
Homo sapiens
NNVYCACGTGACHNNN

NNNDGTCACGTGRBNN
ChIP-seq
Mathelier et al.(2014)
MA0526.2
0.871 0.981
USF2
M07785_2.00
Homo sapiens
NGTCACGTGRBSVVV

BBBSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
GM12878_USF2_Stanford
0.871 0.981
USF2
M07786_2.00
Homo sapiens
NVGTCACGTGRBSVVV

BBBSVYCACGTGACBN
ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF2_Stanford
0.871 0.981
USF2
M07787_2.00
Homo sapiens
RGTCACGTGVB

VBCACGTGACY
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_USF2_Stanford
0.871 0.981
USF2
M07788_2.00
Homo sapiens
NGTCACGTGRBSV

BSVYCACGTGACN
ChIP-seq
Gerstein et al.(2012)
HepG2_USF2_Stanford
0.871 0.981
USF2
M07789_2.00
Homo sapiens
RGTCACGTGRBSV

BSVYCACGTGACY
ChIP-seq
Gerstein et al.(2012)
K562_USF2_Stanford
0.871 0.981
USF2
M08715_2.00
Homo sapiens
NVGTCACGTGVBSVNNVNB

VNBNNBSVBCACGTGACBN
Misc
Kulakovskiy et al.(2013)
USF2_HUMAN.H11MO.0.A
0.871 0.981
USF2
M09812_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_01
0.871 0.981
USF2
M09813_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_02
0.871 0.981
USF2
M09814_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6_01
0.871 0.981
USF2
M09815_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$USF2_Q6
0.871 0.981
USF2
M04077_2.00
Homo sapiens
VNCAYGTGACN

NGTCACRTGNB
SELEX
Yin et al.(2017)
USF2_eDBD_Methyl-HT-SELEX
0.871 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000072660 bHLH 229 284

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
9292_YGR249W Saccharomyces paradoxus 9292_YGR249W I 0.000
9591_YGR249W Saccharomyces bayanus 9591_YGR249W I 0.000
AACERI_AaceriAEL216C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAEL216C I 0.000
AGOS_AEL216C Ashbya gossypii AGOS_AEL216C I 0.000
DEHA2G20636g Debaryomyces hansenii DEHA2G20636g I 0.000
Ecym_5573 Eremothecium cymbalariae Ecym_5573 I 0.000
GNLVRS01_PISO0A02134g Millerozyma farinosa GNLVRS01_PISO0A02134g N 0.000
GNLVRS01_PISO0B02289g Millerozyma farinosa GNLVRS01_PISO0B02289g N 0.000
KAFR_0B04410 Kazachstania africana KAFR_0B04410 I 0.000
KLTH0H00814g Kluyveromyces thermotolerans KLTH0H00814g I 0.000
KLTH0H00814g Lachancea thermotolerans KLTH0H00814g I 0.000
KNAG_0K00470 Kazachstania naganishii KNAG_0K00470 N 0.000
Kpol_1050p79 Vanderwaltozyma polyspora Kpol_1050p79 N 0.000
Kpol_1062p8 Vanderwaltozyma polyspora Kpol_1062p8 I 0.000
NCAS_0E03870 Naumovozyma castellii NCAS_0E03870 I 0.000
NDAI_0B00940 Naumovozyma dairenensis NDAI_0B00940 I 0.000
SAKL0H02354g Lachancea kluyveri SAKL0H02354g I 0.000
Scas_Contig645.15 Saccharomyces castellii Scas_Contig645.15 I 0.000
SKUD_199909 Saccharomyces kudriavzevii SKUD_199909 I 0.000
TPHA_0A05250 Tetrapisispora phaffii TPHA_0A05250 I 0.000
TPHA_0H01130 Tetrapisispora phaffii TPHA_0H01130 I 0.000
MGA1 Saccharomyces cerevisiae YGR249W D 0.000
ZBAI_07702 Zygosaccharomyces bailii ZBAI_07702 I 0.000