Tfec (Rattus norvegicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSRNOG00000061595 T037258_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tfec
M00755_2.00
Mus musculus
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2013)
pTH2885
0.914 0.981
Tfec
M01736_2.00
Mus musculus
NCNCRTGVYN

NRBCAYGNGN
PBM
Weirauch et al.(2014)
pTH5065
0.914 0.981
TFEC
M02778_2.00
Homo sapiens
RNCACRTGAB

VTCAYGTGNY
SELEX
Jolma et al.(2013)
TFEC_1
0.914 0.963
TFEC
M04078_2.00
Homo sapiens
NVCACGTGACN

NGTCACGTGBN
SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX
0.914 0.963
TFEC
M04079_2.00
Homo sapiens
VNCATGTGAYN

NRTCACATGNB
SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX
0.914 0.963
Mitf
M01741_2.00
Mus musculus
NCDCGTGAYN

NRTCACGHGN
PBM
Weirauch et al.(2014)
pTH5465
0.870 0.907
MITF
M08058_2.00
Homo sapiens
NNNDRTCACGTGAYHNNN

NNNDRTCACGTGAYHNNN
ChIP-seq
Mathelier et al.(2014)
MA0620.2
0.870 0.907
MITF
M08740_2.00
Homo sapiens
YCAYGTGACH

DGTCACRTGR
Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A
0.870 0.907
Mitf
M08765_2.00
Mus musculus
BCHYGTGACY

RGTCACRDGV
Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A
0.870 0.907
Mitf
M09475_2.00
Mus musculus
GTCACRWGVB

VBCWYGTGAC
Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085
0.870 0.907
MITF
M09880_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q4
0.870 0.907
MITF
M09881_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q6
0.870 0.907
Tfe3
M01715_2.00
Mus musculus
NCDCRTGAYN

NRTCAYGHGN
PBM
Weirauch et al.(2014)
pTH5057
0.870 0.889
Tfe3
M05833_2.00
Mus musculus
CACGTGAY

RTCACGTG
SMiLE-seq
Isakova et al.(2017)
TFE3
0.870 0.889
Tfe3
M08743_2.00
Mus musculus
TCACGTGACH

DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A
0.870 0.889
Tfe3
M09884_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_01
0.870 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000073175 bHLH 111 164

Links

Other bHLH family TFs
Other Rattus norvegicus TFs

148 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Thhalv10000419m.g Eutrema salsugineum Thhalv10000419m.g N 0.000
Thhalv10027108m.g Eutrema salsugineum Thhalv10027108m.g N 0.000
Thhalv10027063m.g Eutrema salsugineum Thhalv10027063m.g N 0.000
Thhalv10026904m.g Eutrema salsugineum Thhalv10026904m.g N 0.000
Thhalv10000718m.g Eutrema salsugineum Thhalv10000718m.g N 0.000
Thhalv10000694m.g Eutrema salsugineum Thhalv10000694m.g N 0.000
Thhalv10000641m.g Eutrema salsugineum Thhalv10000641m.g N 0.000
Thhalv10000593m.g Eutrema salsugineum Thhalv10000593m.g N 0.000
Thhalv10000571m.g Eutrema salsugineum Thhalv10000571m.g N 0.000
Thhalv10000561m.g Eutrema salsugineum Thhalv10000561m.g N 0.000
Thhalv10000537m.g Eutrema salsugineum Thhalv10000537m.g N 0.000
Thhalv10000526m.g Eutrema salsugineum Thhalv10000526m.g N 0.000
Thhalv10000522m.g Eutrema salsugineum Thhalv10000522m.g N 0.000
Thhalv10000489m.g Eutrema salsugineum Thhalv10000489m.g N 0.000
Thhalv10000437m.g Eutrema salsugineum Thhalv10000437m.g N 0.000
Thhalv10000430m.g Eutrema salsugineum Thhalv10000430m.g N 0.000
Thhalv10027114m.g Eutrema salsugineum Thhalv10027114m.g N 0.000