TFEB (Sus scrofa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSSCG00000001621 T037386_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Tfeb
M01728_2.00
Mus musculus
CWCGTGAY

RTCACGWG
PBM
Weirauch et al.(2014)
pTH5072
0.914 1.000
TFEB
M02781_2.00
Homo sapiens
RNCACGTGAY

RTCACGTGNY
SELEX
Jolma et al.(2013)
TFEB_1
0.914 1.000
TFEB
M02727_2.00
Homo sapiens
RTCACGTGAY

RTCACGTGAY
SELEX
Jolma et al.(2010)
TFEB_dimer
0.914 1.000
TFEB
M04088_2.00
Homo sapiens
YVCACGTGAYN

NRTCACGTGBR
SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX
0.914 1.000
TFEB
M08718_2.00
Homo sapiens
CACGTGAYY

RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C
0.914 1.000
Tfeb
M08753_2.00
Mus musculus
CACGTGAYY

RRTCACGTG
Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C
0.914 1.000
TFEB
M04089_2.00
Homo sapiens
VNCATGTGAYN

NRTCACATGNB
SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX
0.914 1.000
Mitf
M01741_2.00
Mus musculus
NCDCGTGAYN

NRTCACGHGN
PBM
Weirauch et al.(2014)
pTH5465
0.855 0.889
MITF
M08058_2.00
Homo sapiens
NNNDRTCACGTGAYHNNN

NNNDRTCACGTGAYHNNN
ChIP-seq
Mathelier et al.(2014)
MA0620.2
0.855 0.889
MITF
M08740_2.00
Homo sapiens
YCAYGTGACH

DGTCACRTGR
Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A
0.855 0.889
Mitf
M08765_2.00
Mus musculus
BCHYGTGACY

RGTCACRDGV
Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A
0.855 0.889
Mitf
M09475_2.00
Mus musculus
GTCACRWGVB

VBCWYGTGAC
Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085
0.855 0.889
MITF
M09880_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q4
0.855 0.889
MITF
M09881_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MITF_Q6
0.855 0.889
Tfe3
M01715_2.00
Mus musculus
NCDCRTGAYN

NRTCAYGHGN
PBM
Weirauch et al.(2014)
pTH5057
0.855 0.870
Tfe3
M05833_2.00
Mus musculus
CACGTGAY

RTCACGTG
SMiLE-seq
Isakova et al.(2017)
TFE3
0.855 0.870
Tfe3
M08743_2.00
Mus musculus
TCACGTGACH

DGTCACGTGA
Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A
0.855 0.870
Tfe3
M09884_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TFEA_01
0.855 0.870
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000001756 bHLH 236 289
ENSSSCP00000023442 bHLH 266 319

Links

Other bHLH family TFs
Other Sus scrofa TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0004_1965 Arabidopsis lyrata Al_scaffold_0004_1965 N 0.000
OPUNC02G29130 Oryza punctata OPUNC02G29130 N 0.000
OPUNC12G11490 Oryza punctata OPUNC12G11490 N 0.000
ORGLA12G0114800 Oryza glaberrima ORGLA12G0114800 N 0.000
PRUPE_ppa017597mg Prunus persica PRUPE_ppa017597mg N 0.000
Pm010610 Prunus mume Pm010610 N 0.000
Bostr.15697s0367 Boechera stricta Bostr.15697s0367 N 0.000
Bostr.23794s0621 Boechera stricta Bostr.23794s0621 N 0.000
Cagra.1508s0136 Capsella grandiflora Cagra.1508s0136 N 0.000
Carubv10011063m.g Capsella rubella Carubv10011063m.g N 0.000
Ciclev10017579m.g Citrus clementina Ciclev10017579m.g N 0.000
Lus10038432.g Linum usitatissimum Lus10038432.g N 0.000
orange1.1g041370m.g Citrus sinensis orange1.1g041370m.g N 0.000
ONIVA12G13030 Oryza nivara ONIVA12G13030 N 0.000
OGLUM12G14400 Oryza glumaepatula OGLUM12G14400 N 0.000
BHLH52 Arabidopsis thaliana AT1G30670 N 0.000
BHLH53 Arabidopsis thaliana AT2G34820 N 0.000
BGIOSGA037431 Oryza indica BGIOSGA037431 N 0.000
Bo3g028090 Brassica oleracea Bo3g028090 N 0.000
Bo4g039270 Brassica oleracea Bo4g039270 N 0.000
Bo4g182930 Brassica oleracea Bo4g182930 N 0.000
Bra005389 Brassica rapa Bra005389 N 0.000
Bra021933 Brassica rapa Bra021933 N 0.000
Bra022993 Brassica rapa Bra022993 N 0.000
fgenesh1_pm.C_scaffold_1002485 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002485 N 0.000
OB07G14260 Oryza brachyantha OB07G14260 N 0.000
OB12G20560 Oryza brachyantha OB12G20560 N 0.000
Thhalv10017751m.g Eutrema salsugineum Thhalv10017751m.g N 0.000