NHLH2 (Sus scrofa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSSSCG00000006744 T037408_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN

NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.914 1.000
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH

DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.914 1.000
NHLH2
M09878_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.914 1.000
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.914 1.000
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB

VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.914 0.981
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK

MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.914 0.981
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.914 0.981
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.914 0.981
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY

RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.914 0.981
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN

NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.914 0.981
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN

NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.914 0.981
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH

DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.914 0.981
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.914 0.981
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH

DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.891 0.904
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH

DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.891 0.904
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH

DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.891 0.904
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC

GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.891 0.904
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM

KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.891 0.904
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC

GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.891 0.904
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY

RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.891 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000007194 bHLH 78 130

Links

Other bHLH family TFs
Other Sus scrofa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
scx Xenopus tropicalis XB-GENE-939816 N 0.000
scxa Tetraodon nigroviridis ENSTNIG00000019087 N 0.000
Scx Rattus norvegicus ENSRNOG00000021812 N 0.000
SCX Pteropus vampyrus ENSPVAG00000009266 N 0.000
ENSPPYG00000018968 Pongo abelii ENSPPYG00000018968 N 0.000
ENSPFOG00000018890 Poecilia formosa ENSPFOG00000018890 N 0.000
ENSPANG00000017828 Papio anubis ENSPANG00000017828 N 0.000
scxa Oryzias latipes ENSORLG00000006041 N 0.000
TCF15 Ochotona princeps ENSOPRG00000005163 N 0.000
scxa Takifugu rubripes ENSTRUG00000017355 N 0.000
SCX Tursiops truncatus ENSTTRG00000006425 N 0.000
scx.S Xenopus laevis XB-GENE-17345241 N 0.000
Pvit_18729 Pogona vitticeps Pvit_18729 N 0.000
Ogr05722 Ophisaurus gracilis Ogr05722 N 0.000
Cmyd_10002800 Chelonia mydas Cmyd_10002800 N 0.000
YQE_10857 Dendroctonus ponderosae YQE_10857 N 0.000
TC015754 Tribolium castaneum TC015754 N 0.000
L798_09207 Zootermopsis nevadensis L798_09207 N 0.000
ENSXMAG00000008863 Xiphophorus maculatus ENSXMAG00000008863 N 0.000
ENSONIG00000007265 Oreochromis niloticus ENSONIG00000007265 N 0.000
SCX Otolemur garnettii ENSOGAG00000028494 N 0.000
Scx Mus musculus ENSMUSG00000034161 N 0.000
scxb Danio rerio ENSDARG00000011635 N 0.000
ENSCSAG00000008646 Chlorocebus sabaeus ENSCSAG00000008646 N 0.000
SCX Cavia porcellus ENSCPOG00000022112 N 0.000
SCX Bos taurus ENSBTAG00000009816 N 0.000
ENSAPLG00000008246 Anas platyrhynchos ENSAPLG00000008246 N 0.000
ENSAMXG00000018584 Astyanax mexicanus ENSAMXG00000018584 N 0.000
ENSAMXG00000012951 Astyanax mexicanus ENSAMXG00000012951 N 0.000
SCX Anolis carolinensis ENSACAG00000012688 N 0.000
scxa Danio rerio ENSDARG00000035695 N 0.000
ENSFALG00000000366 Ficedula albicollis ENSFALG00000000366 N 0.000
ENSMICG00000015678 Microcebus murinus ENSMICG00000015678 N 0.000
ENSMEUG00000000468 Macropus eugenii ENSMEUG00000000468 N 0.000
ENSLOCG00000007444 Lepisosteus oculatus ENSLOCG00000007444 N 0.000
ENSLACG00000014122 Latimeria chalumnae ENSLACG00000014122 N 0.000
ENSGMOG00000015981 Gadus morhua ENSGMOG00000015981 N 0.000
scxa Gasterosteus aculeatus ENSGACG00000005863 N 0.000
SCX Homo sapiens ENSG00000260428 N 0.000
SCX Felis catus ENSFCAG00000026245 N 0.000
DAPPUDRAFT_227979 Daphnia pulex DAPPUDRAFT_227979 N 0.000