myod1 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000018793 T037804_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYOD1
M04116_2.00
Homo sapiens
BAACASSTGNYV

BRNCASSTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_1
0.881 0.904
MYOD1
M04117_2.00
Homo sapiens
BRVCASMTGDCG

CGHCAKSTGBYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_HT-SELEX_2
0.881 0.904
MYOD1
M04120_2.00
Homo sapiens
NAACASSTGNYV

BRNCASSTGTTN
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_1
0.881 0.865
MYOD1
M04121_2.00
Homo sapiens
BRMCASCTGDCR

YGHCAGSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_HT-SELEX_2
0.881 0.865
Myod1
M08060_2.00
Mus musculus
NVNRRCAGSTGBN

NVCASCTGYYNBN
ChIP-seq
Mathelier et al.(2014)
MA0499.1
0.881 0.904
MYOD1
M08724_2.00
Homo sapiens
NVNNRNRRCAGCTGN

NCAGCTGYYNYNNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_HUMAN.H11MO.0.A
0.881 0.904
Myod1
M08745_2.00
Mus musculus
NVNRRNRRCAGSTGB

VCASCTGYYNYYNBN
Misc
Kulakovskiy et al.(2013)
MYOD1_MOUSE.H11MO.0.A
0.881 0.904
MYOD1
M09838_2.00
Homo sapiens
HRVCACCTGHBB

VVDCAGGTGBYD
Transfac
Matys et al.(2006)
V$MYOD_01
0.881 0.904
MYOD1
M09839_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MYOD_Q6_02
0.881 0.904
MYOD1
M09840_2.00
Homo sapiens
NVCABCTGNY

RNCAGVTGBN
Transfac
Matys et al.(2006)
V$MYOD_Q6
0.881 0.904
MYOD1
M04118_2.00
Homo sapiens
BAACANVTGTYV

BRACABNTGTTV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_1
0.881 0.865
MYOD1
M04119_2.00
Homo sapiens
BRRCASSTGDCR

YGHCASSTGYYV
SELEX
Yin et al.(2017)
MYOD1_eDBD_Methyl-HT-SELEX_2
0.881 0.865
MYOD1
M04122_2.00
Homo sapiens
NAMCASSTGBYV

BRVCASSTGKTN
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_1
0.881 0.904
MYOD1
M04123_2.00
Homo sapiens
BRMCASVTGNCR

YGNCABSTGKYV
SELEX
Yin et al.(2017)
MYOD1_FL_Methyl-HT-SELEX_2
0.881 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021975 bHLH 82 133
ENSTNIP00000021976 bHLH 96 147

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
myod2 Takifugu rubripes ENSTRUG00000014891 I 0.914
ENSXMAG00000009780 Xiphophorus maculatus ENSXMAG00000009780 I 0.902
ENSPFOG00000009843 Poecilia formosa ENSPFOG00000009843 I 0.902
ENSONIG00000007897 Oreochromis niloticus ENSONIG00000007897 I 0.902
MYOD1 Canis familiaris ENSCAFG00000009066 I 0.881
ENSPANG00000011946 Papio anubis ENSPANG00000011946 I 0.881
MYOD1 Procavia capensis ENSPCAG00000001317 I 0.881
MYOD1 Bos taurus ENSBTAG00000002216 I 0.881
MYOD1 Anolis carolinensis ENSACAG00000000054 I 0.881
MYOD1 Otolemur garnettii ENSOGAG00000029784 I 0.881
MYOD1 Monodelphis domestica ENSMODG00000006749 I 0.881
ENSMPUG00000013563 Mustela putorius furo ENSMPUG00000013563 I 0.881
Myod1 Mus musculus ENSMUSG00000009471 D 0.881
ENSOARG00000025174 Ovis aries ENSOARG00000025174 I 0.881
ENSPPYG00000003449 Pongo abelii ENSPPYG00000003449 I 0.881
MYOD1 Pan troglodytes ENSPTRG00000003406 I 0.881
MYOD1 Tupaia belangeri ENSTBEG00000003438 I 0.881
MYOD1 Tursiops truncatus ENSTTRG00000013869 I 0.881
ENSAMEG00000018197 Ailuropoda melanoleuca ENSAMEG00000018197 I 0.881
ENSBTAP00000002868-D1 Bos grunniens ENSBTAP00000002868-D1 I 0.881
ENSSTOG00000011556 Ictidomys tridecemlineatus ENSSTOG00000011556 I 0.881
MYOD1 Sus scrofa ENSSSCG00000013375 I 0.881
MYOD1 Pteropus vampyrus ENSPVAG00000012829 I 0.881
Myod1 Rattus norvegicus ENSRNOG00000011306 I 0.881
ENSSARG00000002401 Sorex araneus ENSSARG00000002401 I 0.881
ENSSHAG00000017220 Sarcophilus harrisii ENSSHAG00000017220 I 0.881
MYOD1 Macaca mulatta ENSMMUG00000006400 I 0.881
MYOD1 Ochotona princeps ENSOPRG00000002390 I 0.881
MYOD1 Echinops telfairi ENSETEG00000003979 I 0.881
MYOD1 Felis catus ENSFCAG00000004973 I 0.881
MYOD1 Homo sapiens ENSG00000129152 D 0.881
MYOD1 Myotis lucifugus ENSMLUG00000007940 I 0.881
MYOD1 Dasypus novemcinctus ENSDNOG00000017164 I 0.881
MYOD1 Callithrix jacchus ENSCJAG00000009258 I 0.881
MYOD1 Cavia porcellus ENSCPOG00000021351 I 0.881
ENSCSAG00000004934 Chlorocebus sabaeus ENSCSAG00000004934 I 0.881
MYOD1 Gorilla gorilla ENSGGOG00000008222 I 0.881
MYOD1 Equus caballus ENSECAG00000002132 I 0.881
ENSMEUG00000014270 Macropus eugenii ENSMEUG00000014270 I 0.881
MYOD1 Microcebus murinus ENSMICG00000005566 I 0.881
MYOD1 Loxodonta africana ENSLAFG00000018353 I 0.881
ENSGMOG00000016963 Gadus morhua ENSGMOG00000016963 I 0.878
ENSPFOG00000013532 Poecilia formosa ENSPFOG00000013532 I 0.872
myod1 Danio rerio ENSDARG00000030110 I 0.872
ENSAMXG00000017040 Astyanax mexicanus ENSAMXG00000017040 I 0.872
myod1 Oryzias latipes ENSORLG00000000694 I 0.872
ENSXMAG00000007430 Xiphophorus maculatus ENSXMAG00000007430 I 0.872
myod1 Gasterosteus aculeatus ENSGACG00000008444 I 0.872
ENSGMOG00000011389 Gadus morhua ENSGMOG00000011389 I 0.872
ENSONIG00000010796 Oreochromis niloticus ENSONIG00000010796 I 0.872
Afo_R014556 Aptenodytes forsteri Afo_R014556 I 0.851
Alligator_sinensis_CCG013129.1 Alligator sinensis Alligator_sinensis_CCG013129.1 I 0.851
Gfo_R009107 Geospiza fortis Gfo_R009107 I 0.851
Pvit_01710 Pogona vitticeps Pvit_01710 I 0.851
myod1 Xenopus tropicalis XB-GENE-1017498 I 0.851
Ogr16343 Ophisaurus gracilis Ogr16343 I 0.851
Aan_R006542 Calypte anna Aan_R006542 I 0.851
myod1.S Xenopus laevis XB-GENE-1017506 I 0.851
Brh_R006718 Buceros rhinoceros Brh_R006718 I 0.851
ENSAPLG00000005673 Anas platyrhynchos ENSAPLG00000005673 I 0.851
ENSLACG00000014430 Latimeria chalumnae ENSLACG00000014430 I 0.851
ENSFALG00000000758 Ficedula albicollis ENSFALG00000000758 I 0.851
MYOD1 Gallus gallus ENSGALG00000006216 I 0.851
ENSMGAG00000007210 Meleagris gallopavo ENSMGAG00000007210 I 0.851
ENSLOCG00000002164 Lepisosteus oculatus ENSLOCG00000002164 I 0.851
MYOD1 Taeniopygia guttata ENSTGUG00000008814 I 0.851
myod1 Tetraodon nigroviridis ENSTNIG00000002808 I 0.851
myod1 Takifugu rubripes ENSTRUG00000016609 I 0.851
myod1 Gasterosteus aculeatus ENSGACG00000017350 I 0.847
myod1.L Xenopus laevis XB-GENE-6252600 I 0.845