CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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clocka
(
Takifugu rubripes
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00010 (HLH)
IPR001092
ENSTRUG00000001837
T037821_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN
NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.914
0.920
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH
DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.914
0.920
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN
NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.914
0.920
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.914
0.920
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB
VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.914
0.920
Clock
M09473_2.00
Mus musculus
CACGTGNN
NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.914
0.920
CLOCK
M09849_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.914
0.920
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH
DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.914
0.920
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTRUP00000004233
bHLH
37
86
KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004234
bHLH
37
86
KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004235
bHLH
26
75
KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004236
bHLH
20
69
KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
ENSTRUP00000004237
bHLH
25
74
KRVSRNKSEKKRRDQFNVLIELGTMLPGNTRKMDKSTILQKSIDFLCKHK
Links
Other
bHLH
family TFs
Other
Takifugu rubripes
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy