clockb (Takifugu rubripes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTRUG00000015488 T037917_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Clock
M01735_2.00
Mus musculus
NNCAYRTGNN

NNCAYRTGNN
PBM
Weirauch et al.(2014)
pTH5056
0.893 0.902
CLOCK
M02789_2.00
Homo sapiens
DACACGTGYH

DRCACGTGTH
SELEX
Jolma et al.(2013)
CLOCK_1
0.893 0.902
CLOCK
M04129_2.00
Homo sapiens
NMCACGTGYN

NRCACGTGKN
SELEX
Yin et al.(2017)
CLOCK_eDBD_HT-SELEX
0.893 0.902
CLOCK
M08728_2.00
Homo sapiens
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_HUMAN.H11MO.0.C
0.893 0.902
Clock
M08760_2.00
Mus musculus
DBBBCAYKTGNNHB

VDNNCAMRTGVVVH
Misc
Kulakovskiy et al.(2013)
CLOCK_MOUSE.H11MO.0.C
0.893 0.902
Clock
M09473_2.00
Mus musculus
CACGTGNN

NNCACGTG
Misc
Heinz et al.(2010)
Liver-Clock_GSE39860
0.893 0.902
CLOCK
M09849_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CLOCK_Q6
0.893 0.902
CLOCK
M04130_2.00
Homo sapiens
NRCRCRTGBH

DVCAYGYGYN
SELEX
Yin et al.(2017)
CLOCK_eDBD_Methyl-HT-SELEX
0.893 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000039609 bHLH 28 78
ENSTRUP00000039610 bHLH 26 76
ENSTRUP00000039611 bHLH 35 85

Links

Other bHLH family TFs
Other Takifugu rubripes TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSSHAG00000005555 Sarcophilus harrisii ENSSHAG00000005555 I 0.893
CLOCK Sorex araneus ENSSARG00000002584 I 0.893
Clock Rattus norvegicus ENSRNOG00000002175 I 0.893
CLOCK Sus scrofa ENSSSCG00000008909 I 0.893
ENSSTOG00000016179 Ictidomys tridecemlineatus ENSSTOG00000016179 I 0.893
ENSTGUG00000007495 Taeniopygia guttata ENSTGUG00000007495 I 0.893
CLOCK Tupaia belangeri ENSTBEG00000002540 I 0.893
CLOCK Pteropus vampyrus ENSPVAG00000008960 I 0.893
CLOCK Pan troglodytes ENSPTRG00000016072 I 0.893
ENSPANG00000006882 Papio anubis ENSPANG00000006882 I 0.893
clocka Oryzias latipes ENSORLG00000004495 I 0.893
CLOCK Ochotona princeps ENSOPRG00000005292 I 0.893
CLOCK Procavia capensis ENSPCAG00000001407 I 0.893
ENSPFOG00000015083 Poecilia formosa ENSPFOG00000015083 I 0.893
ENSPSIG00000011404 Pelodiscus sinensis ENSPSIG00000011404 I 0.893
ENSPPYG00000014762 Pongo abelii ENSPPYG00000014762 I 0.893
ENSPFOG00000017215 Poecilia formosa ENSPFOG00000017215 I 0.893
clocka Tetraodon nigroviridis ENSTNIG00000004102 I 0.893
clockb Tetraodon nigroviridis ENSTNIG00000017652 I 0.893
Gfo_R010434 Geospiza fortis Gfo_R010434 I 0.893
ENSP00000370723-D1 Bos grunniens ENSP00000370723-D1 I 0.893
ENSMMUP00000002568 Macaca fascicularis ENSMMUP00000002568 I 0.893
Myotis_brandtii_Clock_10026771 Myotis brandtii Myotis_brandtii_Clock_10026771 I 0.893
Ogr11799 Ophisaurus gracilis Ogr11799 I 0.893
Tal_R002573 Tyto alba Tal_R002573 I 0.893
Pvit_07605 Pogona vitticeps Pvit_07605 I 0.893
Brh_R001802 Buceros rhinoceros Brh_R001802 I 0.893
Afo_R013414 Aptenodytes forsteri Afo_R013414 I 0.893
CLOCK Tursiops truncatus ENSTTRG00000000960 I 0.893
ENSTSYG00000003546 Tarsius syrichta ENSTSYG00000003546 I 0.893
clocka Takifugu rubripes ENSTRUG00000001837 I 0.893
CLOCK Vicugna pacos ENSVPAG00000006438 I 0.893
ENSXMAG00000016928 Xiphophorus maculatus ENSXMAG00000016928 I 0.893
Aan_R004160 Calypte anna Aan_R004160 I 0.893
ENSXMAG00000017672 Xiphophorus maculatus ENSXMAG00000017672 I 0.893
CLOCK Anolis carolinensis ENSACAG00000009335 I 0.893
ENSONIG00000008797 Oreochromis niloticus ENSONIG00000008797 I 0.893
CLOCK Equus caballus ENSECAG00000006331 I 0.893
CLOCK Dasypus novemcinctus ENSDNOG00000018101 I 0.893
clocka Danio rerio ENSDARG00000011703 I 0.893
CLOCK Echinops telfairi ENSETEG00000015604 I 0.893
ENSFALG00000003646 Ficedula albicollis ENSFALG00000003646 I 0.893
ENSONIG00000002943 Oreochromis niloticus ENSONIG00000002943 I 0.893
CLOCK Homo sapiens ENSG00000134852 D 0.893
CLOCK Felis catus ENSFCAG00000001064 I 0.893
ENSCSAG00000005019 Chlorocebus sabaeus ENSCSAG00000005019 I 0.893
CLOCK Cavia porcellus ENSCPOG00000011807 I 0.893
ENSAMXG00000021792 Astyanax mexicanus ENSAMXG00000021792 I 0.893
ENSAMXG00000005565 Astyanax mexicanus ENSAMXG00000005565 I 0.893
ENSAMEG00000018420 Ailuropoda melanoleuca ENSAMEG00000018420 I 0.893
ENSAPLG00000007176 Anas platyrhynchos ENSAPLG00000007176 I 0.893
CLOCK Bos taurus ENSBTAG00000044044 I 0.893
CLOCK Callithrix jacchus ENSCJAG00000018261 I 0.893
CLOCK Canis familiaris ENSCAFG00000002140 I 0.893
CLOCK Gallus gallus ENSGALG00000013793 I 0.893
clocka Gasterosteus aculeatus ENSGACG00000015939 I 0.893
Clock Mus musculus ENSMUSG00000029238 D 0.893
ENSMPUG00000005091 Mustela putorius furo ENSMPUG00000005091 I 0.893
CLOCK Gorilla gorilla ENSGGOG00000005753 I 0.893
ENSNLEG00000008499 Nomascus leucogenys ENSNLEG00000008499 I 0.893
ENSOARG00000001602 Ovis aries ENSOARG00000001602 I 0.893
CLOCK Otolemur garnettii ENSOGAG00000012464 I 0.893
CLOCK Oryctolagus cuniculus ENSOCUG00000022350 I 0.893
CLOCK Macaca mulatta ENSMMUG00000001919 I 0.893
CLOCK Monodelphis domestica ENSMODG00000020678 I 0.893
ENSGMOG00000004825 Gadus morhua ENSGMOG00000004825 I 0.893
CLOCK Loxodonta africana ENSLAFG00000009558 I 0.893
ENSLOCG00000014043 Lepisosteus oculatus ENSLOCG00000014043 I 0.893
ENSMEUG00000005481 Macropus eugenii ENSMEUG00000005481 I 0.893
CLOCK Myotis lucifugus ENSMLUG00000010007 I 0.893
CLOCK Meleagris gallopavo ENSMGAG00000011742 I 0.893
ENSLACG00000013436 Latimeria chalumnae ENSLACG00000013436 I 0.893
CLOCK Ornithorhynchus anatinus ENSOANG00000003801 I 0.869
clockb Danio rerio ENSDARG00000003631 I 0.861
clock Xenopus tropicalis XB-GENE-495448 I 0.860
clock.L Xenopus laevis XB-GENE-6254406 I 0.860
SNAPOd2T00001991001 Oikopleura dioica SNAPOd2T00001991001 I 0.838